Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2076 ATGAATCTTCCATCCACTATTCCTCTAGCACTTCCAACCTATTTATTCATTTCGTTTGTTCTAGTTAATTGCTACCATGCTGAGGCTACAAATGGAGACGACATGGTTATATCTATAGGAGCAATAATTGATGTTAACTCTCGGGTTGGGAAAGAACAGCTTGTAGCCATGGACCTTGCAGCTCAAAGTCACAATAACACTTCCAAGAGCCACAAGATGGCCCTTCATTTTCAGGAACCCACCAAAGATCCCTTCGGACCCACTTCTCTTGCTAGAAATATGATTAAAACACAGAAGGCGCAAGTGATTATAGGGATGCACACATGGACAGAAGCAGCTTCAGTGGCTGAATTAGGACGCGAAACTCTAGTTCCTGTCATATCCTTTGCAGCACCTACCATCACCCCACCATTGATGCCAACTCGCTGGCCTTTTTCGGTAAGAATGGCCAACAATGGTACTGCATATGCAAAATGTGTTGCAGATGTAGTACATGCTTATGGTTGGCAAAGAGTAGTAGTCATTTATGAAGATGGAGATTATGAGATGCTAGCTTTGCTATCTGAGACCCTCCAAGAAGTTGGTTCAATGATTGAGTACCGTTTAGCTCTTCCATCGCCTTCTTATCTACCTAATCCTGGAGAGTTTATTCGCGAAGAGTTGTATAATTTGATTAAAAATATACAATCCCGGGTGTTCATTGTTCTGCAATCATCATTAGAAATGGTGATCCATTTGTTCAGAGAAGCTTCACACATGGGACTTGTGGAAAGAGAATCAGCTTGGATAATCCCAGAGAGCATAACTAATTTGCTTGACACTGTCAACAAGTCTGCTATTTCCTACATGGAAGGAGCTTTAGGAATCAAGACCTACTACTCTAACCATAGCAATGAATATCAAGACTTTGAGGCTCAGTTCCGAAAATCTTTTCGGGCCAAGTATCCTGAGGAGGATAACTGTGATCCGGGATTTTACGCTCTGCAAGCATATGATAGCATTAAAATTGTTGCGCAAGCAATAGATAGAACGGCCAGTGGCAGAAAGACTTTGCTAACAGAAATACTATCTAGCAATTTCCCTGGCTTAAGTGGAGAAATTCGATTTGAAGCAGCCCAACTCTTGCAGAATCCTACCTTCAGGATGGTGAATGTAGATAAGAAGAGTTACAGAGAATTAGACTTTTGGACTCTAAAACGCGGGTTCATCACTAGCCTCACTACAGAACAAGGTTCAGATAGTGTTTCTAGGAACACAGAGAGTTTACGTGGTGTAATATGGCCAGGGAAACTAGTTAGATTTCCGAAGGGCTGGAATCTGCCTACTAAACAAAATCCAATGCAAATAGCAGTTCCTGGAAGAACCTCCTTTCCCGCGTTTGTTAAGGTTGATCGTGACGAGCATCATAATTCATATAAATTTGATGGATTCTGCATTGAACTTTTTAATAAGGTGATAGGGATTTTGGAGTATGATCTGCCGCATGAGTTTCATCCCATCAACGGAACCTATAACGATCTGGTTCAACTTGTCTATAACAAGTCTTACGCGGCAGCTATTGGAGACGTGACCATAACAGAAGACAGATTGCAATATGTAGACTTTACTGCGTCATATGCAGAATCAGGATTGTCAGTGATAGTTACAGAAGAGTTCAAAGCACCGACATGGATGTTTACGAAGCCCTTCACCTGGCAAATGTGGTTGGCAACTGGTGCCGTGTTGATTTATACAATGGTAGTTGTGTGGTACCTTGAGAGGGAACCCAATCCTGAGTTTCATGGCAATTTGAAAAGCCAGATCAGCACTGCTCTTACGTTTACCTTCTCCTCTCTATTCTTTGCTCACAGGGAGAAAATCTATAGCCACTTATCTCGCATGGTGATGGTATCGTGGATGTTTCTAGTATTGATTCTTAGCTCAAGCTACACTGCTAGTCTTTCTTCGATTCTCACAGTTCAACGACTGCAACCAACTGTGACAGACATCCAGATCCTGAAGAACAACAACAAGAAAATTGGTTGTGACGGAGATTCATTTGTTAGGACATACCTGGAGGAAGTCGAAAAGTTCAAGCCAGAGAACATCATAAACATTGGCAGTGAAAACAGTTATGAGGATGCATTCAAAAACAACTCAATAGCAGCTGCTTTTCTCGAACTCCCTTATGAGAAAGTATATATCAGTAAATACTGCAAGGGATACTATGCCTTTGTAATCAACAAAAAATTTGGAGGACTGGGATTTATCTTCCAGAAAGGCTCACCAGTGGCCAGAGATTTTTCCAAAGCTATACTGCGTCTCTTGGAGGATGGAACAGTGAAGGAATTAGAAGACAAATGGTTGAAACCTGATGGAGACTGCCACAATAATTCGACCTCACAGGGTACAGAAAGTTTGAGGCTTGAAAGTTTCTGGGTTCTGTATGTGATCTATGGTGCCACTTCTACTTTTTGTTTTCTACTTCATACAATCCAGTCGCTGAAATCTAGACAAACAACCCGGGATGAGGCACGAGAAGGTAATGCCAACCCAGGTGAGGAAAGCCGATGA 2553 0.4191 MNLPSTIPLALPTYLFISFVLVNCYHAEATNGDDMVISIGAIIDVNSRVGKEQLVAMDLAAQSHNNTSKSHKMALHFQEPTKDPFGPTSLARNMIKTQKAQVIIGMHTWTEAASVAELGRETLVPVISFAAPTITPPLMPTRWPFSVRMANNGTAYAKCVADVVHAYGWQRVVVIYEDGDYEMLALLSETLQEVGSMIEYRLALPSPSYLPNPGEFIREELYNLIKNIQSRVFIVLQSSLEMVIHLFREASHMGLVERESAWIIPESITNLLDTVNKSAISYMEGALGIKTYYSNHSNEYQDFEAQFRKSFRAKYPEEDNCDPGFYALQAYDSIKIVAQAIDRTASGRKTLLTEILSSNFPGLSGEIRFEAAQLLQNPTFRMVNVDKKSYRELDFWTLKRGFITSLTTEQGSDSVSRNTESLRGVIWPGKLVRFPKGWNLPTKQNPMQIAVPGRTSFPAFVKVDRDEHHNSYKFDGFCIELFNKVIGILEYDLPHEFHPINGTYNDLVQLVYNKSYAAAIGDVTITEDRLQYVDFTASYAESGLSVIVTEEFKAPTWMFTKPFTWQMWLATGAVLIYTMVVVWYLEREPNPEFHGNLKSQISTALTFTFSSLFFAHREKIYSHLSRMVMVSWMFLVLILSSSYTASLSSILTVQRLQPTVTDIQILKNNNKKIGCDGDSFVRTYLEEVEKFKPENIINIGSENSYEDAFKNNSIAAAFLELPYEKVYISKYCKGYYAFVINKKFGGLGFIFQKGSPVARDFSKAILRLLEDGTVKELEDKWLKPDGDCHNNSTSQGTESLRLESFWVLYVIYGATSTFCFLLHTIQSLKSRQTTRDEAREGNANPGEESR* 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2076 850 Pfam Bacterial extracellular solute-binding proteins, family 3 471 783 IPR001638 -
Gso11g2076 850 Gene3D - 328 445 - -
Gso11g2076 850 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 18 848 - -
Gso11g2076 850 CDD PBP1_GABAb_receptor_plant 38 402 IPR044440 -
Gso11g2076 850 Pfam Receptor family ligand binding region 55 387 IPR001828 -
Gso11g2076 850 Gene3D - 446 555 - -
Gso11g2076 850 Gene3D - 711 790 - -
Gso11g2076 850 PANTHER GLUTAMATE RECEPTOR 3.4 18 848 - -
Gso11g2076 850 Gene3D - 556 692 - -
Gso11g2076 850 PIRSF IGluLR_plant 343 849 IPR017103 -
Gso11g2076 850 PIRSF IGluLR_plant 9 350 IPR017103 -
Gso11g2076 850 SMART GluR_14 448 784 IPR001320 GO:0015276|GO:0016020
Gso11g2076 850 Pfam Ligand-gated ion channel 784 814 IPR001320 GO:0015276|GO:0016020
Gso11g2076 850 Gene3D - 154 322 - -
Gso11g2076 850 CDD GluR_Plant 445 782 - -
Gso11g2076 850 SUPERFAMILY Periplasmic binding protein-like II 424 785 - -
Gso11g2076 850 SUPERFAMILY Periplasmic binding protein-like I 36 438 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2076 Gso-Chr11 36243834 36248094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2076 37 834 Ion Channels AT2G29120 31.167 4.15e-128 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2076 - - gmx:100776933 1667.13