Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2061 ATGACAGTTATTTTAACAGTGGTGTTATTATTTGTTGGATTTGTGTTCCTGGTCCTACTTCATGTTTGTTTTTCCGAGAGACTCTTTAGGAGAGGATCAATGGTTGAGAGGGGTGCAAATGTAGGCAGAAGCATGTCCATAGATGACTTGGAGATGCTTCCATGTTATGATTATGTTGCCAAAGGCAACACAAGCAGCCCTGTGGATTGTGCAGTTTGCTTGGAGAACCTCATCACAGGAGATAAGTGCAGATTGTTACCTATGTGCAAGCACAGTTTTCATGCCCAATGTGTGGACACATGGCTTCTAAAGACACCCATATGTCCAATTTGCAGGTGTAATGCTCATTCTCATAGTGGAAACCAAGTTGTAGGTAACAATGACTACTTTGTTGCACCAAATAGTGGGTCTAGGGAGAGCCAAAGTCAGCAACATGACAATATGGTATTGGTGCAGTTGAGAGAAAGCCTAGAAAATGTTCCATCCACAAATGTTGACATAGAAAATCCAACATTAGGAAGTCACAACTTGGTCAGAGAGCACTAA 546 0.4176 MTVILTVVLLFVGFVFLVLLHVCFSERLFRRGSMVERGANVGRSMSIDDLEMLPCYDYVAKGNTSSPVDCAVCLENLITGDKCRLLPMCKHSFHAQCVDTWLLKTPICPICRCNAHSHSGNQVVGNNDYFVAPNSGSRESQSQQHDNMVLVQLRESLENVPSTNVDIENPTLGSHNLVREH* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2061 181 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 151 - -
Gso11g2061 181 PANTHER RING-H2 FINGER PROTEIN ATL3-LIKE 1 151 - -
Gso11g2061 181 SMART ring_2 70 111 IPR001841 -
Gso11g2061 181 SUPERFAMILY RING/U-box 63 125 - -
Gso11g2061 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 121 IPR013083 -
Gso11g2061 181 Pfam Ring finger domain 69 112 IPR001841 -
Gso11g2061 181 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2061 Gso-Chr11 36075986 36077310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2061 1 112 C3H Transcription Factor Family AT5G42200 33.628 1.05e-16 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2061 - K15692 gmx:102667575 352.058