Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2059 ATGATCATGGAGCTCTCGGATTCCACCGGCGGTGACCGAAACCTCAACGCGCCGCCGCCACTGCCGCCGCCGCACAACAACCACAACCAAGACGCGCGTTCCGGCCTCGGAATCGACCTAAACGAGATCCCGTCGCCTTCATCTTCGTTTCCAGAAACCCTACCGGGCTCCGTCACCGTCGACGTCGTCCGCTCATATCACGACAACCCGGCGCCGCCTCCGGGAGGTCCCGCCGCCCTCCCCCGCAGTGGCTCCTCTCCCTGCGCCGCATGCGCCAAGCCCTCCCCCGCCGCCGGCAGCCACCACCAACTCGTCGTGTGCGACGGCTGCGAGCGCGGCTTCCACCTCGCCTGCGCCGGAATTCGCGGCGGAGGCCGGCAGGCAGCGAGCCTCGACGAATGGGTCTGCGGCGAGTGCGTCGCCGCCGGAGTGAAGAGCAAGCGGTGGCCGTTGGGCGTTAAGCAGCTTCTCGATATCAATGCTCCGCCGCCGAGCGACGCCGAAGGCGACGGAGGCGACGGAGGCGACGATGAAGTGCAGGTTTCGAGAAAGCACGCTCTGGGTGATAATTCTTTTGCTGCCAATCCATTTGGTGCCCTAGTGACGAATTCAAACTTCAACAATGGGAATGCTAATGGCTTCCAAAAGGCATCTGAAGTTGTGACACATGCTGTTAGAGTCGGTTTTGAGGATATATTGAACCATACTCAGTCAATTACTAGAAGCTTTGAGGAGGCTCTTAGAGATTTTGTATCTGAACGGCGTGGTGTACTAGAGGAAGGTTGGCGAGTGGAATTTAGACAATCAGTGAGCAACTCTGAACTGTATGCAGTTTACTGTGCACCAGATGGAAAGATATTTGATTCTGTGTATGAAGTGGCTTGTTATTTGGGGCTAACGTCTGGCTACAACTCTATTGAATCTGAACTAAGGAGTGAGAGGTCTCTCCCTTCTTTAGGTGGGCCTCCATCCAGAAAAAGAAAGTCAACAAGGACTACAGTAGCCAACGGTTCTATGGAAAATCGGGGAACCTCGACGAATAGTAATTGTAAGGATCCTCCTTGTGATGGTTTAAATGTGGAATGTGCTAGTGCTAGGGGAAATATCCCAAAACCCTCTGAAATTGGAAGAAAAGAGGATTGCCACTCCTGCTCTCAACAATCTGCTGATGGACTTCCTCTACAGTTCAAGGACTTCTTTGTTCTTTCTTTGGGGAAAGTTGATGGGAGACCTTCATATTATGATGTTAATCTTATCTATCCTGTAGGTTATAAATCTTGTTGGCATGACAAGATCACTGGCTCTCTTTTTACATGTGAAGTTTTGGAAGGTGGTGATTCTGGACCTATATTTAGGATCCGAAGGTGTTCCTGTTCTGAATTTCCTGTTCCAGTTGGGTCAACCATACTCTCAATGTCAAAACTTTGTCAAGTTGTGAGTCAAACCAATGAAGGTGAGAGAAAAACTAATGCTAATATGGATTTAGATTATGATGAAGGTCTCCAAATGATGCTTTTAGACTCTTGTTTGCCAACGGAAAATGATATCCTAAGTTGCTTCCCAAGCTGCCCTATTACTAGTTCAGTTCAAGATAATGCTAGCAATTCATTAGCTGATAACTTGGGGTTTAATGGCCTTGGCGAAATTTTGGTGGAAGAGCGGTCGTCATTCTCTGCGTGGAGAGTTATTTCTCAAAAGCTAGTTAATGCTTGCAAGGATATCTTAAAACTGAAAGGAACTCTCAAGTTCTATTGTAACCATGTTGATAAGTGGGATTTAAGGAATGGAAAAAGTGATACATACTGTACTTCGTTGGATAAATTTTGTGGTTCTCTTGGTTCAGTTGGCATCCCAGATGTAATTTATTCAGACAATGATCTGGAAGGTATCTACGTGGCATTGGGAAAATGGTTGGAGCAGGATAGATTTGGATTAGATGTTGAATTTGTGCAAGAAGTATTGGAACAGCTTCCTAGTGTCCAAGACTCTTTGCAGTATGAACTTTTAAATAATAGAAATAATAGCTTGTCATTGCCAACAGTTGAAAATGGTTTCTTAGTGGTTGAATGGAGAGATGGATCAAAATATCAGGAAGAAGCAGTTCAAGCTTTATATGGAAGGTCCAAGAAGGTGACTGAAAAAAGTATTAAGGAAAGTTGTCATCCACCACTTGGGAAGCCATTATGCTCTAGGGCTCCTGGTGAGCTCATTGGTGACATTTTTCAGGCTTGGGAGCTTTTAAAGCGATTTCATGAAATTCTGGACCTGAAAGAACCATTGACATTAGATGAACTTGAGAAAGAACTCATTAACCCCTGGTTTGATGGATCAAATTTTCTTGAGAAATCTGAGAGGGACATGGATGAAAGTCAAGTTTTTATTTCCCTAGGAGCTGATGGTAATGGTAGACCATTATTATCCCCAAGATGTGAAGTTGATCCATCAGTTTCCATAGAAAGTTCTCATGCATTTATTCATGTGGAAACAGAAGCAATGAAAGAGACAGATCAAGTTAAGCTTGCCTCTTTCACATATGCCAGATGCTTCGGTGTAGCTTTGACCAAGGCTCATAAATCGTTGCTAAGAGTTCTAATAGGTGAATTGCTGTCAAAGGTGGCTGCCCTGGTAGATCCAAATTCTGAACCTGGAGAATCACGAACAAGACGGGGAAGAAGGAAAGATATGGATAGTGCAGTTCCTGCTAAACGAACCAAGCTCAATATGCTTCCTATTAATGAATTGACTTGGCCAGAATTAGCTCGTAGGTATATGTTGGCTTTTTTGTCAATGGATGGTAACCTTGAGTCTGCAGAAATTACTGCTCGCGAGAGTGCTAAAGTATTTCGTTGCTTACGTGGTGATGGTGGTTTGCTGTGTGGTTCTCTTACTGGTGTGGCTGGGATGGAAGCAGATGCACAGCTGCTTGCAGAGGCTACAAAGACAATTTTTGGTTCTTTAAGCAGAGAAAATGACATACTAACCATGGAAGAAGAAGAGTCTAATGCAAAGGGTGCTCCTGAAATTTTTTTGGCAAATGATGGTAATGTTTCTGAATGGGCACAGATGCTAGAACCTGTCAGAAAGCTACCAACAAATGTAGGCACCCGAATCAGAAAGTGTGTTTATGAGGCTCTGGAAAAGAATCCACCAGAATGGGCAAGGAAAATACTGGAGCATTCAATCAGTAAGGAAGTGTACAAGGGCAATGCTTCTGGACCAACAAAGAAAGCAGTTCTTTCAGTGTTGGTTAAAGTTGGTGGTGAAGGATTGCAATCGAATCCCAATAAAAGCCAGAAAAAGAAAATTGTTATATCAATTTCTGACATTATCATGAAACAATGTCGCATTGTATTACGTCGTGCCGCTGCTGCAGATGATTCAAAGGTTTTTTGCAATTTGTTGGGAAGAAAATTAATAAATTCTTCAGATAATGATGATGAGGGGCTTCTTGGATCTCCAGCCATGGTAGCCCGTCCTCTTGACTTCCGCACTATTGACCTAAGATTAGCTACTGGAGCTTATGGTGGATCTCATGAAGCTTTTCTGGAGGATGTCCGCGAGCTGTGGAACAATGTCCGTGTTGCTTTTGGGGATCAACCTGATTTAGTTGAGCTGGCTGAAAAACTGACCCAAAACTTTGAATCATTATATAATGAGGAGGTTGTCACCTATGTCCAAAGATTTGTGGAATATGCTAAACTGGAATGCTTAAGTGCAGAAATGAGAAAGGAAGTTGGTGATTTTATTGAGTCAACAAATGAGATTCCGAAGGCCCCTTGGGATGAGGGAGTATGTAAAGTATGTGGCATTGATAGGGATGATGATAGTGTTCTACTATGTGATACTTGTGATGCTGAGTATCATACATATTGCTTGAATCCTCCACTTGCGAGGATCCCTGAGGGAAACTGGTACTGTCCTTCTTGTGTTGTTGGTAAACATGCAACTCAAAATGTTACAGAACGTACACAGGTTATTGGCAAACGGCAAAGTAAAAAATTCCAGGGAGAAGTCAATTCTCTTTACTTAGAATCTCTAGCTCATTTATCTGCTGCAATTGAAGAAAAAGAATACTGGGAGTACAGTGTGGGCGAGAGAACTTTCCTTCTCAAGTTTTTATGCGATGAGTTGCTTAATTCTTCCCTGATACACCAGCACCTTGAGCAATGTGCAGAGTTGTCTGCAGAGTTACATCAGAAATTGCGTGCACACTCTGCAGAGTGGAAAAGTCTGAAAACTAGAGAGGATATTTTATCCACAAAAGCTGCCAAAATTGATACTTTCTCACTAAATACTGCTGGAGAAGTTGGTCTTAAGGAAGGGTTTGCTTCTTTGTTATCAAATACTGGTAAATGTCTGGTCCAGCCACATACTGCAGTTGACAATCCTAGTAATTTTGGGGTATTTGTTGATAGTCTGCCTTCAGAAGAGGTTACCAAAGATAAGTATAGGTTTGATAGTGTTGATAAAAGCATATCTGTGACAAATTCAGATTCTGATAGCCAAAATATGAATTCCATAGATGTAGAGGGGCAATTTAGAAATGTCTCTGGCGCTGTGGAGTCTCAATGTACAGACAAATCCCCCAAGTCTTTTCCATTGCCAAATCATATGCCTCAAGAAACAAATGGTGCTGGTGGAGCATCTCTTGTTCAGGGTAAAAACCAGAAATGTGAGGGAAAGGACATACCTACTCCTGTGTCTTACCAGCAAGGAATGCCTGTTGATGTTCCTCAGATTTCTGTGAATGAGTCCGAACCCTACCACCTTGAGCTCATTGCCATCAAACGTGATATTTCGCTATTGCAGGACTCCATAACTAGTGTAGCATCACAGCTGCTGAAGCTCTCTGTTCGCCGGGAATGTTTGGGTATTGATTCCATTGGTCGATTGTACTGGGCTTCGGCTTTGCCCGGAGGACGTTCACGTATAGTTGTTGATGCAAGTGCTGCTTTGCTGCATGGAAGAGGAATGACATTTAGCAGAGACTATGTGGAGAAGTTTTCTGTTCTGCAGCATTGTGCACTATCTGACAAGGATTCCTCTTTAATGTCTCAGCCTAGTAATCCTTTGGGCAATAGTTCTCCGTGGATTGCTTATGAAACTGATGTTGAAATTGAAGAGCTCTTAGGTTGGCTGGATGATAGTGACCCTAAAGAAAGAGAACTGAAAGATTCCATTATGCTGGGGCCAAAATCAAGATTCCAACAGTTTATTAATGCACAGACTGAAGATCGGGCCAAGGACCAAGGAAATGTTTCTATGCCAAGAAACAGAGAGAAAACAGTATCTAATTCTCTTGTTACCAAGGCAACTTCCTTGCTGGAAAAGAAATTTGGTCCCTTTGTTGAGTGGGATAATAGTGAAGTGTTAAAGAAGCAAAATAGAAAGACCAGAACAACTAATGATGAAAAGTTGTATAGGTGTGAGTGCCTAGAACCCATATTGCCTTCTAGGAAACACTGCACACATTGTCACAAAACTGTTGCGAGTGACATTGAATTTGATGGGCACAATGATGGCAAGTGTAATGCAGGTCTTCTGGCCATAGAGAAGAATAAGGATAAAAATGGATCTTCTAAAGGAAGAGGGAACTTAAAATGTGATACCTTACATGAAAAATTCAGAGCTGATGCGGAAACAGCTTTGACCTCGGTTAGTGGATCTTCTAAGCTTAGCTCAAGATTGATTAAATTTTCAAATGAAGAATCCACATGCCCATTTAATTTTGAAGATATATGTTCCAAGTTTGTGACAAATGATTCTAACAAGGAACTTGTCAGCGAAATAGGTCTTATTGGTTCAGATGGTATCCCATCCTTTGTTCCTTCTGTATCTCCTTTTGTTAGTGAATATACACTCTCAGCTCAAAAGGATGAAAGCATTGTTGGTGGTGTGTCCATAGTGTCAGAAAGCCGGGTTTCTCAGGGAAACACTGATGGAGCTGGCACATGCCTTGACCATAAATCTGGCATTTCTACTGGAAAATTGGCTGCAAATGAAAGCAATAAATCCAACAAATCATCCTTGAGAGAACAAAGAGATGGAAAATTCTCTTTTTGTAGTCCTGCTTCAGTTATGGGAGCCGATGGGTGCTGTGTGGTTCCTTCGCCTTCATTGAGACCACTAGTTGGAAAAGCTTCTCACATTTTGAGGCAGCTGAAGATAAATCTACTTGACATGGATGCTGCACTCCTGGCAATTGCTCTTAGACCATCAAAGGCTGTGCCAGACAGAAGACAGGCTTGGCGTACATTTGTAAAATCTGCAAAGACTATATATGAGATGATTCAGGCAACATTTACACTGGAGGATATGATTAAGACAGAGTACTTGAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCAGCTGCCAAATCTTCTACTTTGCCTTCCCTTGCCCTTCGCATATACTCCCTTGATTTAGCCATTATATATGAGAAGATGCCCAATTCAAGCTTTACTGACAGCTCTGAACCTTCTGTCATAGCGGAACCAAAACCACTGATGAATGTGGACACAGAAAAATCCAAAGCAAGCCGGAAGTCAACCAGGAAAAGGAAGGAATCAGATAGTTGA 6582 0.4318 MIMELSDSTGGDRNLNAPPPLPPPHNNHNQDARSGLGIDLNEIPSPSSSFPETLPGSVTVDVVRSYHDNPAPPPGGPAALPRSGSSPCAACAKPSPAAGSHHQLVVCDGCERGFHLACAGIRGGGRQAASLDEWVCGECVAAGVKSKRWPLGVKQLLDINAPPPSDAEGDGGDGGDDEVQVSRKHALGDNSFAANPFGALVTNSNFNNGNANGFQKASEVVTHAVRVGFEDILNHTQSITRSFEEALRDFVSERRGVLEEGWRVEFRQSVSNSELYAVYCAPDGKIFDSVYEVACYLGLTSGYNSIESELRSERSLPSLGGPPSRKRKSTRTTVANGSMENRGTSTNSNCKDPPCDGLNVECASARGNIPKPSEIGRKEDCHSCSQQSADGLPLQFKDFFVLSLGKVDGRPSYYDVNLIYPVGYKSCWHDKITGSLFTCEVLEGGDSGPIFRIRRCSCSEFPVPVGSTILSMSKLCQVVSQTNEGERKTNANMDLDYDEGLQMMLLDSCLPTENDILSCFPSCPITSSVQDNASNSLADNLGFNGLGEILVEERSSFSAWRVISQKLVNACKDILKLKGTLKFYCNHVDKWDLRNGKSDTYCTSLDKFCGSLGSVGIPDVIYSDNDLEGIYVALGKWLEQDRFGLDVEFVQEVLEQLPSVQDSLQYELLNNRNNSLSLPTVENGFLVVEWRDGSKYQEEAVQALYGRSKKVTEKSIKESCHPPLGKPLCSRAPGELIGDIFQAWELLKRFHEILDLKEPLTLDELEKELINPWFDGSNFLEKSERDMDESQVFISLGADGNGRPLLSPRCEVDPSVSIESSHAFIHVETEAMKETDQVKLASFTYARCFGVALTKAHKSLLRVLIGELLSKVAALVDPNSEPGESRTRRGRRKDMDSAVPAKRTKLNMLPINELTWPELARRYMLAFLSMDGNLESAEITARESAKVFRCLRGDGGLLCGSLTGVAGMEADAQLLAEATKTIFGSLSRENDILTMEEEESNAKGAPEIFLANDGNVSEWAQMLEPVRKLPTNVGTRIRKCVYEALEKNPPEWARKILEHSISKEVYKGNASGPTKKAVLSVLVKVGGEGLQSNPNKSQKKKIVISISDIIMKQCRIVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVARPLDFRTIDLRLATGAYGGSHEAFLEDVRELWNNVRVAFGDQPDLVELAEKLTQNFESLYNEEVVTYVQRFVEYAKLECLSAEMRKEVGDFIESTNEIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVVGKHATQNVTERTQVIGKRQSKKFQGEVNSLYLESLAHLSAAIEEKEYWEYSVGERTFLLKFLCDELLNSSLIHQHLEQCAELSAELHQKLRAHSAEWKSLKTREDILSTKAAKIDTFSLNTAGEVGLKEGFASLLSNTGKCLVQPHTAVDNPSNFGVFVDSLPSEEVTKDKYRFDSVDKSISVTNSDSDSQNMNSIDVEGQFRNVSGAVESQCTDKSPKSFPLPNHMPQETNGAGGASLVQGKNQKCEGKDIPTPVSYQQGMPVDVPQISVNESEPYHLELIAIKRDISLLQDSITSVASQLLKLSVRRECLGIDSIGRLYWASALPGGRSRIVVDASAALLHGRGMTFSRDYVEKFSVLQHCALSDKDSSLMSQPSNPLGNSSPWIAYETDVEIEELLGWLDDSDPKERELKDSIMLGPKSRFQQFINAQTEDRAKDQGNVSMPRNREKTVSNSLVTKATSLLEKKFGPFVEWDNSEVLKKQNRKTRTTNDEKLYRCECLEPILPSRKHCTHCHKTVASDIEFDGHNDGKCNAGLLAIEKNKDKNGSSKGRGNLKCDTLHEKFRADAETALTSVSGSSKLSSRLIKFSNEESTCPFNFEDICSKFVTNDSNKELVSEIGLIGSDGIPSFVPSVSPFVSEYTLSAQKDESIVGGVSIVSESRVSQGNTDGAGTCLDHKSGISTGKLAANESNKSNKSSLREQRDGKFSFCSPASVMGADGCCVVPSPSLRPLVGKASHILRQLKINLLDMDAALLAIALRPSKAVPDRRQAWRTFVKSAKTIYEMIQATFTLEDMIKTEYLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDLAIIYEKMPNSSFTDSSEPSVIAEPKPLMNVDTEKSKASRKSTRKRKESDS* 2194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2059 2193 MobiDBLite consensus disorder prediction 159 179 - -
Gso11g2059 2193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1264 1311 IPR013083 -
Gso11g2059 2193 PANTHER OS02G0192300 PROTEIN 33 2192 - -
Gso11g2059 2193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 145 IPR013083 -
Gso11g2059 2193 SUPERFAMILY FYVE/PHD zinc finger 1251 1314 IPR011011 -
Gso11g2059 2193 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1344 1388 IPR028942 -
Gso11g2059 2193 ProSitePatterns Zinc finger PHD-type signature. 88 139 IPR019786 -
Gso11g2059 2193 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 33 2192 - -
Gso11g2059 2193 SMART PHD_3 1264 1310 IPR001965 -
Gso11g2059 2193 SMART PHD_3 87 140 IPR001965 -
Gso11g2059 2193 MobiDBLite consensus disorder prediction 877 897 - -
Gso11g2059 2193 ProSiteProfiles FYR domain FYRN motif profile. 391 444 IPR003888 GO:0005634
Gso11g2059 2193 Gene3D - 392 504 - -
Gso11g2059 2193 ProSiteProfiles Bromodomain profile. 1155 1203 IPR001487 GO:0005515
Gso11g2059 2193 ProSitePatterns Zinc finger PHD-type signature. 1265 1309 IPR019786 -
Gso11g2059 2193 MobiDBLite consensus disorder prediction 1 94 - -
Gso11g2059 2193 MobiDBLite consensus disorder prediction 1744 1764 - -
Gso11g2059 2193 MobiDBLite consensus disorder prediction 41 55 - -
Gso11g2059 2193 Pfam PHD-finger 1264 1310 IPR019787 -
Gso11g2059 2193 Pfam PHD-finger 88 140 IPR019787 -
Gso11g2059 2193 MobiDBLite consensus disorder prediction 882 897 - -
Gso11g2059 2193 Pfam Bromodomain 1153 1208 IPR001487 GO:0005515
Gso11g2059 2193 MobiDBLite consensus disorder prediction 311 352 - -
Gso11g2059 2193 Pfam Methyl-CpG binding domain 250 302 IPR001739 GO:0003677
Gso11g2059 2193 SUPERFAMILY DNA-binding domain 248 302 IPR016177 GO:0003677
Gso11g2059 2193 MobiDBLite consensus disorder prediction 2172 2193 - -
Gso11g2059 2193 ProSiteProfiles Zinc finger PHD-type profile. 85 142 IPR019787 -
Gso11g2059 2193 CDD Bromodomain 1110 1217 - -
Gso11g2059 2193 SUPERFAMILY FYVE/PHD zinc finger 86 141 IPR011011 -
Gso11g2059 2193 MobiDBLite consensus disorder prediction 325 352 - -
Gso11g2059 2193 CDD PHD_SF 88 139 - -
Gso11g2059 2193 Gene3D - 1106 1227 IPR036427 GO:0005515
Gso11g2059 2193 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 248 315 IPR001739 GO:0003677
Gso11g2059 2193 ProSiteProfiles Zinc finger PHD-type profile. 1262 1312 IPR019787 -
Gso11g2059 2193 CDD PHD1_Lid2p_like 1264 1309 - -
Gso11g2059 2193 MobiDBLite consensus disorder prediction 2153 2193 - -
Gso11g2059 2193 SUPERFAMILY Bromodomain 1099 1219 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2059 Gso-Chr11 36050440 36064689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2059 30 2190 C2H2 Transcription Factor Family AT3G01460 45.236 0.0 1723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso11g2059 Bromodomain 5.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2059 K22768 - gmx:100820223 4201.74