Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2043 ATGCCCTCGTCTTATGCCTCGCCCTGTGTCCCTCCACGACTCCGCCGTGGCGCTAGACCACGTGGCGGTGGCCGTGGCCGTGGTGGTTTTTCTCGCCCCCGCGATCCCTCTTCCCGGCTCCTCCCTGCAGACGAAGCACGAAACGGTGACGCTATTAACTTCGAGGCGTACGAGTCCGTACCGGTGGAGGCTAGTGGGAAGGACGTGCCTGCGCCGGTGAACACCTTCAATGAAGCGGACTTGGACGAAGGCTTGAAGAGGAACATCGAGCGTTGCAAGTACGTGAAGCCCACGCCAGTTCAGCGCCACGCGATTCCCATCGTGAGTGCGGGACGCGACCTTATGGCGTGCGCACAGACTGGTTCGGGCAAAACGGCTGCGTTTTGCTTCCCCATTATATCTGGGATTTTGAAGGGTCGTTATCGTTCTGGGTTTTCATCAATGCCATCTCCTGGTGCCGCTATTGCATACCCCGCCGCACTTATTCTTTCTCCTACCAGGGAGTTATCATGCCAGATACGCGACGAAGCCAATAAATTCGCGTATCAAACTGGAGTGAAGGTTGTGGTTGCCTATGGTGGGGCTCCTATTACTCAGCAGCTGCGCCTTTTGAAGAAAGGTGTTGATATATTGGTTGCGACTCCTGGGCGTTTGGTGGATATTATTGAAAGAGAAAGGGTTTCGTTGACAAAGATAAAGTATCTTGCTTTGGATGAGGCTGATCGTATGTTGGACATGGGTTTTGAGCATCAAATACGTAAGATTGTGGAGCAAATGCATATGCCCCCGCCGGGTATTAGACAGACATTGTTGTTTAGTGCCACGTTTCCTAATGGTATACAGAAGCTAGCATCGGACTTTTTATCCAACTACATATTCCTGTCTGTTGGAAGGGTTGGATCGAGTACTGAACTGATTGTGCAGAAGATTGAGCCTGTACAGGATATGGACAAAAGGGACCATCTTATTAAACATCTACGACGTCAAAGTGTGCATGGGTTCAATGGGAAGCATGCTTTGACTCTTGTATTTGTTGAAACTAAGAGAGGAGCGGATGTTTTGGAAGGTTGGTTGTTGAGAAGTGGCTTTTCAGCTGTTGCCATACATGGTGACAAAGTTCAAATGGAAAGGGAACGGGCTTTAAGATCCTTCAAATCTGGTGTGACTCCCATTTTGGTTGCAACTGATGTTGCTTCACGGGGTTTGGATATCCCGCATGTGGCTCATGTTATAAACTTTGACTTGCCCAGAGACATTGATAACTACGTACATAGAATTGGAAGAACAGGCCGTGCAGGCAAATCTGGTTTAGCTACTGCCTTCTTCAGCGATAAGAATAGCCCTATTGCAAAGTCGCTTATAGGACTCTTGCAGGAAGCAAATCAAGAAGTTCCATCTTGGCTCAACCAATATGCAGAGGGTTCATCATCTGGTGGGGGTAGTCAAGGCTATGGAGCTCAGCGTTACAGCAGTGGTGGGAGTTATGGTGGTCGTGATTTCCGAAATGTTATTGAAGCAGAGGTGGAGAATAACAACTGTTACAGTACAAATGTCAATGCAGATCATGCTGTAGAGTCTTATTACACTGCTGATGATGCCTCCTATGACATCCAAAACTCCAACATAGATTCCTCTTTTGACACTTTGAATATTGCATCTGCGGGCAGTTATTATAATCACACTGATTTTTGTGAGTTGAATGGAGCTGGTAGGGTTGAAGAAGATGGGCCTCTTGGTTATGCATCTATTGTTGCCACTGGATGGGACTAG 1770 0.4802 MPSSYASPCVPPRLRRGARPRGGGRGRGGFSRPRDPSSRLLPADEARNGDAINFEAYESVPVEASGKDVPAPVNTFNEADLDEGLKRNIERCKYVKPTPVQRHAIPIVSAGRDLMACAQTGSGKTAAFCFPIISGILKGRYRSGFSSMPSPGAAIAYPAALILSPTRELSCQIRDEANKFAYQTGVKVVVAYGGAPITQQLRLLKKGVDILVATPGRLVDIIERERVSLTKIKYLALDEADRMLDMGFEHQIRKIVEQMHMPPPGIRQTLLFSATFPNGIQKLASDFLSNYIFLSVGRVGSSTELIVQKIEPVQDMDKRDHLIKHLRRQSVHGFNGKHALTLVFVETKRGADVLEGWLLRSGFSAVAIHGDKVQMERERALRSFKSGVTPILVATDVASRGLDIPHVAHVINFDLPRDIDNYVHRIGRTGRAGKSGLATAFFSDKNSPIAKSLIGLLQEANQEVPSWLNQYAEGSSSGGGSQGYGAQRYSSGGSYGGRDFRNVIEAEVENNNCYSTNVNADHAVESYYTADDASYDIQNSNIDSSFDTLNIASAGSYYNHTDFCELNGAGRVEEDGPLGYASIVATGWD* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2043 589 Gene3D - 38 296 IPR027417 -
Gso11g2043 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 318 472 IPR001650 -
Gso11g2043 589 MobiDBLite consensus disorder prediction 1 47 - -
Gso11g2043 589 Gene3D - 297 475 IPR027417 -
Gso11g2043 589 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 74 102 IPR014014 GO:0003724
Gso11g2043 589 CDD DEADc_DDX3_DDX4 75 300 IPR044763 GO:0003724|GO:0005524
Gso11g2043 589 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1 38 514 - -
Gso11g2043 589 SMART ultradead3 93 309 IPR014001 -
Gso11g2043 589 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 38 514 - -
Gso11g2043 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 447 IPR027417 -
Gso11g2043 589 Pfam DEAD/DEAH box helicase 98 283 IPR011545 GO:0003676|GO:0005524
Gso11g2043 589 Pfam Helicase conserved C-terminal domain 322 433 IPR001650 -
Gso11g2043 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 105 294 IPR014001 -
Gso11g2043 589 CDD SF2_C_DEAD 306 442 - -
Gso11g2043 589 SMART helicmild6 352 433 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2043 Gso-Chr11 35895533 35898727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2043 74 443 Eukaryotic Initiation Factors Gene Family AT3G13920 34.677 6.14e-58 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2043 K11594 - gmx:100817549 1072