Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2024 ATGGTTCAAACCAGGGCGGAGAATAGTTCGGAATCCAAAATCGCCGTGGCCAATGGCGGAAAAGTAACCAAGGCTAAGAAGAAATCGAAGTGTTCGACAATGCCGCGGAGATCGAGTGCTCGAATTCAAGCGTTGCAAAAAGCCGAGAAGGAGCTCCTTGCTCGTCAAAAAGCGGAGGTAGTAGTAGTTGAAGAGAAAGACAACTGCGAGAACGCGGTGAGGGCGAAGAAGCGCAATAGAAATAGTGGCGGTGAGGAGAGCGTAGCAGTGGAAGAAGAGGTTGTTTCGAAAAAGCGCAAGGGTAAGGTGGAAGAAGTGAATGGGAAGCAGGAAAATGCGGGTGGGGGTTTGGGGGAGAAGAGTGACCCTCTCAAGGTGAAAGAGACTGTAAGACTGTTTAACAAGTATTACCTTCATTTTGTTCAGGAAGAAGAAAAGAGGTGTGCAGCGGCTGAGCCCAAAGCTGCTAAACAAAAGGGTTCTAGAAAGGCAAAGAAGAGAGGTGAAAAATCAAAGGTCACTTCTAAGCGACCAGATCTAAAGGCCATGGGGAAGATGGTGGATAATAATGAAGTATTGTACCCTGGGAAAAGAATTGGCGACATTCCAGGTATTGAGGTTGGATATCAGTTCTATTCTCGTTGTGAAATGGTTGCGGTTGGTTTTCATAGCCACTGGTTAAAGGGCATTGATTATATGCCCAAATCCTATGCCAATGTGTACACTACGTATGAATTTCCAGTTGCTGTTGCCATTATTTTGTCGGGTATGTACGAGGATGATCTCGACAATGCTGACGATGTTGTATACACTGGTCAAGGTGGGCATAATCTCACTGGCAATAAGCGCCAAATCAGGGATCAGAAGTTGGAGTATGGTAACCTGGCTCTCAAGAATTGCGTTGAGCAATGTGTGCCTATTAGAGTCATTCGTGGTCATAAATCTTCAAGCAGTTACTCTGGTAAAATATACACATATGATGGCTTGTACAATGTTGTTGAATATTGGGCAGAGAAGGGAATATCTGGATTCACAGTCTACAAGTTTAGACTTAGCAGGGTTAAAGGGCAACCTAAATTAACCACAAATCAGGTATATTTTGTAAATGGACGTGTACCTCGATCTCTAACAGAGATACAAGGATTGGTCTGTGAGGACATCACTGGAGGTCAAGAAGATATTCCCATTCCGGCTACAAATTTGGTTGATGACCCTCCTGTTCCACCCACAGGTTTCACATATTGTAAGTCTCTTAAGCTTGCAAAGAATGTGAAGCTTCCAAGGATGAATGGCACCGGATGTAAATGCAAAGGCATTTGTAATGACCCAACAACCTGTGCATGTGCACTGCGTAATGGCTCTGATTTTCCATATGTATCTCGGGATGGTGGCAGGTTAGTTGAAGCCAAAGATGTTGTCTTTGAATGTGGTCCCAAATGTGGTTGTGATCCAGGTTGTGTGAACCGAACTTCTCAAAAAGGACTTAGATATCGTCTCGAGGTTTTCCGCACTGCAAACAAAGGATGGGCTGTTAGATCCTGGGATTTTATACCTTCTGGAGCACCAGTTTGTGAGTACACTGGAATACTTTCTAGGACAGATGATATGGATAGGGTATTGGAAAATAATTATATTTTCGAGATAGATTGCTTGCTAACCATGAAGGGGCTTGGGGGGAGGGAGAAACGGTCTCCAAAAGGAGAGATTTCTGCAAATCTCTTGGACAAATATGATGATCAAAGTTCTGAAAGTGCGCCAGAGTTTTGTATTGATGCAGGATCTACTGGAAATGTTGCTAGGTTTATAAACCATTGTTGTGAGCCCAATCTGTTTGTTCAATGTGTTTTGAGCACACACCATGATTTGAGATTGGCTCGTGTAATGCTGTTTGCTGCGGACAACATACCCCCTTTGCAGGAATTAACGTATGACTATGGTTATGAGCTTGATAGCGTCTTGGATTCTGATGGGAAGATCAAGCAAATGCCATGCTATTGTGGAGCCTCATACTGCAGGAAGCGATTATTCTAA 2031 0.4377 MVQTRAENSSESKIAVANGGKVTKAKKKSKCSTMPRRSSARIQALQKAEKELLARQKAEVVVVEEKDNCENAVRAKKRNRNSGGEESVAVEEEVVSKKRKGKVEEVNGKQENAGGGLGEKSDPLKVKETVRLFNKYYLHFVQEEEKRCAAAEPKAAKQKGSRKAKKRGEKSKVTSKRPDLKAMGKMVDNNEVLYPGKRIGDIPGIEVGYQFYSRCEMVAVGFHSHWLKGIDYMPKSYANVYTTYEFPVAVAIILSGMYEDDLDNADDVVYTGQGGHNLTGNKRQIRDQKLEYGNLALKNCVEQCVPIRVIRGHKSSSSYSGKIYTYDGLYNVVEYWAEKGISGFTVYKFRLSRVKGQPKLTTNQVYFVNGRVPRSLTEIQGLVCEDITGGQEDIPIPATNLVDDPPVPPTGFTYCKSLKLAKNVKLPRMNGTGCKCKGICNDPTTCACALRNGSDFPYVSRDGGRLVEAKDVVFECGPKCGCDPGCVNRTSQKGLRYRLEVFRTANKGWAVRSWDFIPSGAPVCEYTGILSRTDDMDRVLENNYIFEIDCLLTMKGLGGREKRSPKGEISANLLDKYDDQSSESAPEFCIDAGSTGNVARFINHCCEPNLFVQCVLSTHHDLRLARVMLFAADNIPPLQELTYDYGYELDSVLDSDGKIKQMPCYCGASYCRKRLF* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2024 676 ProSiteProfiles Post-SET domain profile. 660 676 IPR003616 -
Gso11g2024 676 MobiDBLite consensus disorder prediction 1 41 - -
Gso11g2024 676 SMART set_7 497 652 IPR001214 GO:0005515
Gso11g2024 676 MobiDBLite consensus disorder prediction 74 107 - -
Gso11g2024 676 Gene3D SET domain 377 676 IPR046341 -
Gso11g2024 676 MobiDBLite consensus disorder prediction 149 177 - -
Gso11g2024 676 Pfam SAD/SRA domain 199 357 IPR003105 -
Gso11g2024 676 MobiDBLite consensus disorder prediction 74 121 - -
Gso11g2024 676 SUPERFAMILY PUA domain-like 183 367 IPR015947 -
Gso11g2024 676 MobiDBLite consensus disorder prediction 1 16 - -
Gso11g2024 676 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 35 675 - -
Gso11g2024 676 ProSiteProfiles YDG domain profile. 200 353 IPR003105 -
Gso11g2024 676 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 35 675 - -
Gso11g2024 676 SUPERFAMILY SET domain 382 652 IPR046341 -
Gso11g2024 676 Pfam SET domain 508 646 IPR001214 GO:0005515
Gso11g2024 676 Pfam Pre-SET motif 388 489 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso11g2024 676 Gene3D - 183 369 IPR036987 -
Gso11g2024 676 ProSiteProfiles SET domain profile. 497 646 IPR001214 GO:0005515
Gso11g2024 676 ProSiteProfiles Pre-SET domain profile. 432 494 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso11g2024 676 SMART G9a_1 195 357 IPR003105 -
Gso11g2024 676 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 6 676 IPR025794 GO:0016571
Gso11g2024 676 SMART preset_2 384 481 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2024 Gso-Chr11 35720012 35722623 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2024 186 676 EF-hand Containing Proteins AT5G13960 65.385 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso11g2024 SAD_SRA 8.3e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2024 K11420 - gmx:100812749 1341.64