Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2019 ATGGGTTCGTCCTCTAGTCGACTTGGGTCTCGCCCTTCTGCTTCTAGTTCTAGTCACAGGGTCAACCGCTTCAGACTATCGTCTCTTCTATGTGGCACCTCCACCTCTCGCTCCATTCATCAGATGGAAGAACATTCATCTGAACTTCAGGTTGATTCAGCTAGAGATTTTGATGGTGAAATTCTGAAAGACACTGAGGAATCGCCTTTGTCATATACAGAAGCTAGAATTAGCTCCAGTCCCCCTGCTGAAACTGTAACCTCATCTGATATGAGAACTGAGTTCCATGCTAATACTAGTGTTGAAGGTTCTTCTAGAAACGTTGCAACAAATAGTAAGAGGAGCTGCTTGGCTGAACATGAGGAGCTAGTCCCTCCTTATCAGGTAAGTGCTGGTCATAGTGGTCATGAATCATATAGTGATAGTAGCAACGCAGCTAGTACTTCATTTGTAGAACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGTAGTCAATGATGTTAATAATCCAGTGCTTAGTGGTGTCTCTCAAGTCTCTCACGAGACAATGCACCCAAGAAGTTCAACCCCTCAAGAGCATGGGAATTTTGGTTCTGGTGAAATCTCTGTTGAGAATCACACTAGTGCATTCATATCTATCCAGAATTCTTCCAACCCTGTTGCTCAAGTTTCCAACATAGCAGCAACCTCTCAAGTGCCAGAAGATGAACCTCGTCGTGAGACAATACCTTCGGGTTTAGGTATTCTTGTGTCCAATCGGGAAAGAGGGCCAGGAAATGATAGTGTGCTTCAAGTTGATGTGGTCACCATATCTTCCAACATTTTGTCTGGAAGCAGTGCTGATGCCAATGATTATGATTCCAGAAGGAATGATAGAAGATTATTTTGGGATGCTTTTTCACGACGTAGTTCTAGAAGGCTTGGTGATTCTCCAACCATTGTCTTCTCTGCTGGGGGTGCTGATGATTCTGGATCTCAAGATCGATGGCTAGTTGATTTTGGAGGTGATTTGTCAAATGATGGGGTTGGAGCTGCTTCCGGATATATGGGTAGTAGAATTCACAGATTGAATGAACGAAGAATGCGGCACTCGAGATCTGAGATCTGGGAAAGGCTTCGTGGTGGCTTTGATGAGATTGGTCGGTGGAATTCATGTCCACTAGGAATTCATGCAGATGGCATGTGCTTCTGTGAGTCTTCGCCAATGGCTGAGGAATCTAGCACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTTTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGGCTCTCTGTCTCTATCCATGGTCTCACTCCCTGCACCTGAATCAATTGTTGATTCCCTCCCTCTGAAATCTCACAAAAAGGTTGATGGGGCTGATGTAGGCAATGATGCTGAACAATGCTACATATGTCTGGCGGATTATGAAGAAGGGGACCAAATACGAGTGCTTCCTTGCTTCCACGAGTATCACATGTCATGTGTCGATAAATGGCTTAAAGAAATACATGGTGTATGTCCTCTGTGTCGCGGCAATGTCTGTGGAGGGTCCACAGAGTCTTCTGCCAACTCGGAAGTGCAGTCTCATTGA 1623 0.4479 MGSSSSRLGSRPSASSSSHRVNRFRLSSLLCGTSTSRSIHQMEEHSSELQVDSARDFDGEILKDTEESPLSYTEARISSSPPAETVTSSDMRTEFHANTSVEGSSRNVATNSKRSCLAEHEELVPPYQVSAGHSGHESYSDSSNAASTSFVEQQSSDPVSVNVSANKDVVNDVNNPVLSGVSQVSHETMHPRSSTPQEHGNFGSGEISVENHTSAFISIQNSSNPVAQVSNIAATSQVPEDEPRRETIPSGLGILVSNRERGPGNDSVLQVDVVTISSNILSGSSADANDYDSRRNDRRLFWDAFSRRSSRRLGDSPTIVFSAGGADDSGSQDRWLVDFGGDLSNDGVGAASGYMGSRIHRLNERRMRHSRSEIWERLRGGFDEIGRWNSCPLGIHADGMCFCESSPMAEESSTRASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSLPAPESIVDSLPLKSHKKVDGADVGNDAEQCYICLADYEEGDQIRVLPCFHEYHMSCVDKWLKEIHGVCPLCRGNVCGGSTESSANSEVQSH* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2019 540 Pfam Ring finger domain 478 521 IPR001841 -
Gso11g2019 540 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 538 - -
Gso11g2019 540 MobiDBLite consensus disorder prediction 1 20 - -
Gso11g2019 540 MobiDBLite consensus disorder prediction 64 92 - -
Gso11g2019 540 CDD RING-H2_PA-TM-RING 478 521 - -
Gso11g2019 540 MobiDBLite consensus disorder prediction 71 92 - -
Gso11g2019 540 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 538 - -
Gso11g2019 540 ProSiteProfiles Zinc finger RING-type profile. 479 521 IPR001841 -
Gso11g2019 540 MobiDBLite consensus disorder prediction 133 158 - -
Gso11g2019 540 SUPERFAMILY RING/U-box 472 524 - -
Gso11g2019 540 SMART ring_2 479 520 IPR001841 -
Gso11g2019 540 MobiDBLite consensus disorder prediction 185 207 - -
Gso11g2019 540 MobiDBLite consensus disorder prediction 128 158 - -
Gso11g2019 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 525 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2019 Gso-Chr11 35679767 35683639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2019 349 525 C3H Transcription Factor Family AT5G45290 46.392 3.73e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2019 - - gmx:100783722 1028.85