Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2017 ATGTGTGTGAAAGATGGCGAACAAGTTGGTGAAGATCATATAGAGAAGAACGTTGATAACAATAGGAGAGTTTCATGGCCTTTGCATTGTGATCTCTTGCGTGCCCACATGGATAACAAAGAAAAAGACTCTTCTTTTAGAATTCCCTCTGACCAGATCAGTATTGTAAATTCATCTCCTCTGGAAAGCATATGTGAGGATGCAGAAATTGTGGACAAAAAACAGAACATGATGAACTTTGTCCCTACTCTTCGGTCTGGAGAGTGTTCTGATATTGGAGATCGCCCTTCCATGGAGGATACCCACATATGCATTGGAGACTTGGCAGAAAAATTTGGCAATAACGAACTTTGCAAGGAAGCTATTTCCTTTTATGGTGTATTTGATGGACACGGAGGGAAGAGCGCTGCACAATTTGTTCGTGATCATCTGCCACGGGTGATTGTTGAGGATGCTGACTTCCCTTTGGAATTAGAGAAGGTAGTCACAAGGTCATTTTTGGAGATTGATGCAGAGTTTGCAAGATCATGTTCTACCGAGTCTTCCCTGTCTTCTGGTACAACTGCACTGACTGCAATTATATTTGGAAGGTCTTTACTGGTTGCCAATGCTGGAGACTGCCGCGCTGTATTGTCCCGTGGTGGAGGGGCTATAGAAATGTCCAAAGATCACAGGCCATTGTGCATTAAAGAAAGGAAGAGGATTGAGTCTCTAGGTGGATACATAGATGACGGTTACCTGAACGGCCAGTTAGGAGTGACTCGTGCACTAGGTGACTGGCATCTTGAAGGAATGAAAGAAATGAATGGAAAGGGTGGACCATTGAGTGCTGAGCCAGAACTTAAATTGATGACATTAACAAAAGAAGATGAATTTTTGATAATTGGGAGTGATGGAATCTGGGATGTTTTTCGCAGCCAAAATGCTGTAGACTTTGCTCGAAGGAGGCTTCAAGAGCACAATGATGTGAAGCAGTGTTGCAAGGAGATAATAGGGGAAGCAATAAAGAGAGGAGCAACAGACAACTTGACAGTGGTGATGATATGTTTCCACTCAGAACCACCACCTCCTATGGTTGTAGAAAGGCCTAGAGTCAGAAGAAGTATATCTGCTGAGGGGCTTCAAAATCTCAAGTGCTTGCTAGAAGGATAA 1152 0.4323 MCVKDGEQVGEDHIEKNVDNNRRVSWPLHCDLLRAHMDNKEKDSSFRIPSDQISIVNSSPLESICEDAEIVDKKQNMMNFVPTLRSGECSDIGDRPSMEDTHICIGDLAEKFGNNELCKEAISFYGVFDGHGGKSAAQFVRDHLPRVIVEDADFPLELEKVVTRSFLEIDAEFARSCSTESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRGGGAIEMSKDHRPLCIKERKRIESLGGYIDDGYLNGQLGVTRALGDWHLEGMKEMNGKGGPLSAEPELKLMTLTKEDEFLIIGSDGIWDVFRSQNAVDFARRRLQEHNDVKQCCKEIIGEAIKRGATDNLTVVMICFHSEPPPPMVVERPRVRRSISAEGLQNLKCLLEG* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2017 383 SMART PP2C_4 75 348 IPR001932 -
Gso11g2017 383 Pfam Protein phosphatase 2C 95 342 IPR001932 -
Gso11g2017 383 PANTHER PROTEIN PHOSPHATASE 2C 1 371 IPR015655 GO:0004722|GO:0006470
Gso11g2017 383 Gene3D - 67 354 IPR036457 -
Gso11g2017 383 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 371 - -
Gso11g2017 383 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169
Gso11g2017 383 ProSiteProfiles PPM-type phosphatase domain profile. 85 350 IPR001932 -
Gso11g2017 383 CDD PP2Cc 85 350 IPR001932 -
Gso11g2017 383 SUPERFAMILY PP2C-like 75 352 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2017 Gso-Chr11 35662545 35666153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2017 49 383 PP2C-type Phosphatase Gene Family AT2G25620 56.560 1.09e-133 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Gso11g2017 PP2C 9.9e-69 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2017 K14803 - gmx:100782648 748.814