Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2003 ATGGGAAAGAAAAAGAAGCAAGTAGGAGAAATAGGGGAGGATGGTAAAGTGGGAGATAGCAGCCCCAGAGCATATGATAATGATACTATGGTGTTTATATCCATGTCTCAAGAATTGAAGAATGAGGGGAACAAGCTGTTCCAAAAGAGGGATCTTGAAGGATCTATACTAAAGTATGAGAAAGCCCTCAAGTTGCTTCCGAGAAATCATATTGATGTGTCCTATCTACGGAGCAACATGGCTGCATGTTATATGCAGATGGGACTCAGTGAGTTCCCAAGGGCAATCCATGAATGTGATTTGGCTCTTCAAGTGACACCAAAATATAGTAAAGCTCTGTTGAAGAGGGCAAGGTGCTATGAGGCTTTAAATAGGCTGGATTTAGCTCTGAGGGATGCCAGCACTGTTGTGAAGATGGAGCCAAATAATGTCATGGCATTGGAGATCTCAGAAAAGGTGAAAAATGCACTTGAGGAGAAAGGATTGAGAGTAAGCAATTCAGTAATTGAGTTGCCTCCAGATTATGTTGAACCTCCTAATGCTCTGCCTCCAGAAAAGGCATTGAAAGAGAAGACACGCAAGAAGAAGAGCAGTAAAGAGGAAGAGAAGGCACCTGATGGCAAAATTCCAGAAAAGCAAACTGAGGAGAAATTTGAGGACAAGAAGGCTGAGGGCAGTATTGTAGTCGTAGAGAAGAAGATCAACACGCCCAAGAAGAAGAAGGCCAAGGTAAAAGTTGATGAGAAGAAGGCTGATATTAAGGAAGTTATAGAGGAAAGAAGTAATGGTAGAAGGGAACCTGTTCCTAAGAAAACAGCTAAACTTATTTTCGGTGATGATATAAGATACGCTGAACTGCCTATTAATTGTAGTCTCTTCCAGTTAAGAGAAGTTATTCATGACCGTTTCCCAAGATTAGGAGCTGTTCTTGTCAAATACAGGGACCAAGAAGGTGATTTGGTCACAGTCACTTCTGATGATGAATTAAGATGGGCTGAAACAGGATCCAATGGTTCTATCCGACTGTACATAGTAGAAGCTACTCCTGAGCAGGATCCACTTTTTGAGAAATTTAAAGTGAAGGAGGCGGAAGTGGTTGGCATTAACATTGCACACAAGAGTGGTTGTGTGGGAAAGGCAAAGGAAATTGTTAGCTCTTCTTGCATTGAGGATTGGATAATTCAGTTTGCCAAACTGTTCAAGAACCATGTTGGGTTTGAATCTGACAGATATTTGGATTTTCATGAACTCGGGATGAACCTCTGTTCTGAGGCTTTGGAGGAGACGGTTACAAGTGAAGAAGCACAAGGTCTGTTTGACATTGCAGGAGATATGTTCCAAGAGATGACTGCTCTTGCATTGTTCAACTGGGGAAATGTGCATATGTCTAGGGCAAGGAAGAAAGTGTATGTCAAGGAAGATTCTTCTAAAGAACATCTATGTGAACAAATCAAAAGTTCATACGAGTGGGCACTGGAAGAATATGCAAAAGCGGGAGAAAAATATGAAGCAGCCATTAAAATTAAGTCAGATTTTCATGAAGGCTTCCTGGCACTAGGGCTGCAGCAGTTTGAGCAAGCAAAACTTTCTTGGTATCATGCACTTGGTTGTAATGTAGATTTGCTGACATGGCCTTCCACTGAGGTTCTTCATCTTTACAACAATGCTGAAGAAAATATGGAGAAAGGAATGCAGATATGGGAAGAATCAGAAAAGCAGAACTTGAGTAAAACATCTAGTTCAAATGATGTTAGATTGCATTTGCAGAACATGGGGTTGGATGGGCTTTTTAAAAATATATCCCTAGATGAATTTGCAGCACAGGAGGCACATATGAGGTCTCAAATAAATCTCCTATGGGGTACCATGCTATATGAACGCTCATTTGTGGAGTTCAAATTAGGGCTACCAATATGGCATGAATCTCTAGAAGTTGCAGTTGAGAAGTTTGAACTTGCTGGAGCTTCTCCAACAGATATAGCTGTAGTTTTGAAGAACCACTGTTCAAATAATACTGCAGTAGATGGTCTTGCCTTTAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTACAAAGCTAAAATGTGGCAGAGTGGAGTTCCATCATTTCGTTTGGAACCCTTATTTAGAAGGCGAGTTTCAAAAACTTATCATGCCTTTGAGCTTGCATGA 2175 0.4078 MGKKKKQVGEIGEDGKVGDSSPRAYDNDTMVFISMSQELKNEGNKLFQKRDLEGSILKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEFPRAIHECDLALQVTPKYSKALLKRARCYEALNRLDLALRDASTVVKMEPNNVMALEISEKVKNALEEKGLRVSNSVIELPPDYVEPPNALPPEKALKEKTRKKKSSKEEEKAPDGKIPEKQTEEKFEDKKAEGSIVVVEKKINTPKKKKAKVKVDEKKADIKEVIEERSNGRREPVPKKTAKLIFGDDIRYAELPINCSLFQLREVIHDRFPRLGAVLVKYRDQEGDLVTVTSDDELRWAETGSNGSIRLYIVEATPEQDPLFEKFKVKEAEVVGINIAHKSGCVGKAKEIVSSSCIEDWIIQFAKLFKNHVGFESDRYLDFHELGMNLCSEALEETVTSEEAQGLFDIAGDMFQEMTALALFNWGNVHMSRARKKVYVKEDSSKEHLCEQIKSSYEWALEEYAKAGEKYEAAIKIKSDFHEGFLALGLQQFEQAKLSWYHALGCNVDLLTWPSTEVLHLYNNAEENMEKGMQIWEESEKQNLSKTSSSNDVRLHLQNMGLDGLFKNISLDEFAAQEAHMRSQINLLWGTMLYERSFVEFKLGLPIWHESLEVAVEKFELAGASPTDIAVVLKNHCSNNTAVDGLAFKIDEIVQAWNEMYKAKMWQSGVPSFRLEPLFRRRVSKTYHAFELA* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2003 724 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Gso11g2003 724 ProSiteProfiles PB1 domain profile. 270 347 IPR000270 GO:0005515
Gso11g2003 724 PANTHER PROTEIN CLMP1 3 723 IPR044517 -
Gso11g2003 724 SUPERFAMILY CAD & PB1 domains 272 356 - -
Gso11g2003 724 Gene3D Tetratricopeptide repeat domain 34 165 IPR011990 GO:0005515
Gso11g2003 724 Gene3D - 274 347 - -
Gso11g2003 724 PANTHER PROTEIN PHOX3 3 723 - -
Gso11g2003 724 SMART PB1_new 270 347 IPR000270 GO:0005515
Gso11g2003 724 SMART tpr_5 74 109 IPR019734 GO:0005515
Gso11g2003 724 SMART tpr_5 36 69 IPR019734 GO:0005515
Gso11g2003 724 SMART tpr_5 110 143 IPR019734 GO:0005515
Gso11g2003 724 ProSiteProfiles TPR repeat profile. 110 143 IPR019734 GO:0005515
Gso11g2003 724 MobiDBLite consensus disorder prediction 1 23 - -
Gso11g2003 724 MobiDBLite consensus disorder prediction 173 220 - -
Gso11g2003 724 SUPERFAMILY TPR-like 37 528 IPR011990 GO:0005515
Gso11g2003 724 CDD PB1 274 344 - -
Gso11g2003 724 Coils Coil 239 266 - -
Gso11g2003 724 MobiDBLite consensus disorder prediction 1 21 - -
Gso11g2003 724 MobiDBLite consensus disorder prediction 184 220 - -
Gso11g2003 724 Pfam PB1 domain 272 345 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2003 Gso-Chr11 35545664 35550250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2003 19 143 Calmodulin-binding Proteins AT3G25230 28.058 3.30e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2003 - - gmx:100807387 1369.37