LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso11g1988	ATGTCCACGAACTACTCAACCAATGGAGACTCCGAAACTCTCCTTCGTCGTCCTTTGTTGTCCTCCCAAAGATCCATTGTCAACTCCACGTCCCAGGTTGCTATTGTCGGCTCCAATGTCAGCCCAATTGAGAGCCTCGACTACGAGATTTTCGAGAACGAGTTCTTCAAGCATGATTGGAGGAGCAGAGGGAAGGCTCAGATATTTCAGTTCATGATTATGAAGTGGCTCTTGTGCCTTCTAATTGGCATGATTGTTTGCCTTGTTGGCTTCTGCAACAATCTCGCGGTTGAGAATCTCGCTGGCATCAAGTTTGTGGTCACGTCCAACATGATGTTGGAGAGAAGGTTTCTGATGGCCTTTTTAGTATTTTTTGTTTCAAATTTGGTTCTCACGGTTTTTGCGTGCACAATCACGGCTTTGATAGCACCTACTGCCACCGGTTCAGGTATACCCGAGGTGAAAGCTTACCTGAATGGTGTGGATGCACCTGGAATATTTACTGTACGAACTCTTCTTGTTAAGATTATTGGAAGTATTACAGCAGTGTCATCATCGCTTCTTATTGGGAAGGCGGGGCCTATGGTGCATACAGGTGCATGTGTGGCTGCATTGTTAGGTCAGGGTGGGTCGAAGAGATATGGGTTAACATGGAAATGGTTAAAGTTTTTTAAGAATGACCGAGATCGGAGAGATTTAATAATATGTGGATCAGCAGCTGGAATTGCTGCTGCCTTCCGTGCCCCTGTTGGTGGCGTGTTGTTTGCTCTTGAAGGGATGTCATCTTGGTGGAGAAGTGCCCTTTTGTGGAGAGCTTTCTTCACAGCAGCAATAGTTGCAATTTTGCTTCGTGCCCTGATTGATTTATGTTTAAGTGGTAAATGTGGGTTATTTGGTAAAGGGGGACTGATAATGTTCGATGCTTATTCAGCAAGTATTTCATATCATTTGGTGGATGTTCCTCCTGTGTTTGTTCTTGGTGTTATAGGGGGAATACTTGGCAGCTTATTTAATTTGATTTTGAGTAAAGTTCTTCGCATATACAATTTTATCAATGAGAAAGGCACCATTTTCAAAATTTTGCTTGCCTGTGTAATCTCCATTTTTACATCCTGTCTTCTTTTTGGATTGCCATGGTTAACATCTTGCCGACCTTGTCCGCCTGATCCATCTGAGCCTTGTCCTACAATAGGTCGGTCTGGTATCTACAAGAAATTCCAGTGCCCACCTAATCACTACAATGATCTTGCCAGCCTCATTTTCAACACAAATGATGACGCTATTAGAAATCTATTTAGCAAGAATACCGACGATGAGTTTGAGTTTAAATCAGTGTTCATCTTTTTCATCACTTGCTTTTCTTTAAGTATCTTTAGCTATGGAGTTGTTGCTCCAGCTGGTCTATTTGTGCCAGTTATTGTGACTGGTGCATCTTATGGGCGTATTGTTGGAATGTTGCTTGGCAAAAAGGACAGTCTTAGCCATGGTCTTTATGCTGTACTTGGTGCTGCTTCCTTTCTCGGTGGCTCCATGAGGACAACAGTTTCTTTGTGTGTAATTATTCTAGAACTGACCAATAACCTGTTATTGCTACCCCTAATCATGATGGTGCTGTTCATTTCTAAGACTGTAGCAGATGCTTTCAATGCAAATATATATGACATTATAATGAAAGCCAAGGGTTTGCCTTATTTAGAAACTCATGCTGAACCATATATGAGGCAGCTATCAGTAGGCGATGTAGTCACAGGCCCACTTCAGACATTTAATGGGGTTGAGAAGGTTTGCAACATAGTGTTTATTCTCAGAACTACGGGACATAATGGGTTTCCCGTTATAGACGAGCCTCCTATTTCGCAAGCTCCAGTTTTATTTGGCATAATCCTCCGTGACCATCTTCTCACATTGTTGAAGAAGAAAGCTTTTATGTCCTCACCTATGGCAACAAGTGGTGATGTCATCAATGAGTTTTCAGCAGATGATTTTGCAAAGAAGGGTTCAAGCAAAGGTCGTCTAAAGATAGAGGATATACAGTTATCAGAGGAAGAGATGGACATGTTCATAGATCTACATCCATTTACTAATGCTTCTCCTTATACTGTTGTGGAGACAATGTCACTGGGAAAGGCCCTTACACTTTTCCGAGAGCTAGGTTTAAGGCATCTGCTAGTGGTACCCAAGTTCTCCGGTAGATCACCTGTGGTGGGTATACTCACACGACACGATTTCATGTCAGAACATATATTGGGTTTGCATCCCTTTCTGGTAAGAAACACAGGGAAAAGTTTAAGATTTTAA	2298	0.4221	MSTNYSTNGDSETLLRRPLLSSQRSIVNSTSQVAIVGSNVSPIESLDYEIFENEFFKHDWRSRGKAQIFQFMIMKWLLCLLIGMIVCLVGFCNNLAVENLAGIKFVVTSNMMLERRFLMAFLVFFVSNLVLTVFACTITALIAPTATGSGIPEVKAYLNGVDAPGIFTVRTLLVKIIGSITAVSSSLLIGKAGPMVHTGACVAALLGQGGSKRYGLTWKWLKFFKNDRDRRDLIICGSAAGIAAAFRAPVGGVLFALEGMSSWWRSALLWRAFFTAAIVAILLRALIDLCLSGKCGLFGKGGLIMFDAYSASISYHLVDVPPVFVLGVIGGILGSLFNLILSKVLRIYNFINEKGTIFKILLACVISIFTSCLLFGLPWLTSCRPCPPDPSEPCPTIGRSGIYKKFQCPPNHYNDLASLIFNTNDDAIRNLFSKNTDDEFEFKSVFIFFITCFSLSIFSYGVVAPAGLFVPVIVTGASYGRIVGMLLGKKDSLSHGLYAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLFISKTVADAFNANIYDIIMKAKGLPYLETHAEPYMRQLSVGDVVTGPLQTFNGVEKVCNIVFILRTTGHNGFPVIDEPPISQAPVLFGIILRDHLLTLLKKKAFMSSPMATSGDVINEFSADDFAKKGSSKGRLKIEDIQLSEEEMDMFIDLHPFTNASPYTVVETMSLGKALTLFRELGLRHLLVVPKFSGRSPVVGILTRHDFMSEHILGLHPFLVRNTGKSLRF*	766

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso11g1988	765	Gene3D	Clc chloride channel	67	564	-	-
	Gso11g1988	765	SUPERFAMILY	CBS-domain pair	568	745	IPR046342	-
	Gso11g1988	765	Pfam	CBS domain	697	745	IPR000644	-
	Gso11g1988	765	PRINTS	Plant CLC chloride channel signature	49	57	IPR002251	GO:0005247\|GO:0006821\|GO:0016020
	Gso11g1988	765	PRINTS	Plant CLC chloride channel signature	260	268	IPR002251	GO:0005247\|GO:0006821\|GO:0016020
	Gso11g1988	765	PRINTS	Plant CLC chloride channel signature	274	284	IPR002251	GO:0005247\|GO:0006821\|GO:0016020
	Gso11g1988	765	PRINTS	Plant CLC chloride channel signature	292	299	IPR002251	GO:0005247\|GO:0006821\|GO:0016020
	Gso11g1988	765	PRINTS	Plant CLC chloride channel signature	416	432	IPR002251	GO:0005247\|GO:0006821\|GO:0016020
	Gso11g1988	765	Pfam	Voltage gated chloride channel	133	546	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
	Gso11g1988	765	CDD	CBS_pair_voltage-gated_CLC_euk_bac	568	746	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso11g1988	Gso-Chr11	35395811	35401239	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso11g1988	8	764	Ion Channels	AT5G33280	74.108	0.0	1123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso11g1988	K05016		-	gmx:100817901	1450.26

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