Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1988 ATGTCCACGAACTACTCAACCAATGGAGACTCCGAAACTCTCCTTCGTCGTCCTTTGTTGTCCTCCCAAAGATCCATTGTCAACTCCACGTCCCAGGTTGCTATTGTCGGCTCCAATGTCAGCCCAATTGAGAGCCTCGACTACGAGATTTTCGAGAACGAGTTCTTCAAGCATGATTGGAGGAGCAGAGGGAAGGCTCAGATATTTCAGTTCATGATTATGAAGTGGCTCTTGTGCCTTCTAATTGGCATGATTGTTTGCCTTGTTGGCTTCTGCAACAATCTCGCGGTTGAGAATCTCGCTGGCATCAAGTTTGTGGTCACGTCCAACATGATGTTGGAGAGAAGGTTTCTGATGGCCTTTTTAGTATTTTTTGTTTCAAATTTGGTTCTCACGGTTTTTGCGTGCACAATCACGGCTTTGATAGCACCTACTGCCACCGGTTCAGGTATACCCGAGGTGAAAGCTTACCTGAATGGTGTGGATGCACCTGGAATATTTACTGTACGAACTCTTCTTGTTAAGATTATTGGAAGTATTACAGCAGTGTCATCATCGCTTCTTATTGGGAAGGCGGGGCCTATGGTGCATACAGGTGCATGTGTGGCTGCATTGTTAGGTCAGGGTGGGTCGAAGAGATATGGGTTAACATGGAAATGGTTAAAGTTTTTTAAGAATGACCGAGATCGGAGAGATTTAATAATATGTGGATCAGCAGCTGGAATTGCTGCTGCCTTCCGTGCCCCTGTTGGTGGCGTGTTGTTTGCTCTTGAAGGGATGTCATCTTGGTGGAGAAGTGCCCTTTTGTGGAGAGCTTTCTTCACAGCAGCAATAGTTGCAATTTTGCTTCGTGCCCTGATTGATTTATGTTTAAGTGGTAAATGTGGGTTATTTGGTAAAGGGGGACTGATAATGTTCGATGCTTATTCAGCAAGTATTTCATATCATTTGGTGGATGTTCCTCCTGTGTTTGTTCTTGGTGTTATAGGGGGAATACTTGGCAGCTTATTTAATTTGATTTTGAGTAAAGTTCTTCGCATATACAATTTTATCAATGAGAAAGGCACCATTTTCAAAATTTTGCTTGCCTGTGTAATCTCCATTTTTACATCCTGTCTTCTTTTTGGATTGCCATGGTTAACATCTTGCCGACCTTGTCCGCCTGATCCATCTGAGCCTTGTCCTACAATAGGTCGGTCTGGTATCTACAAGAAATTCCAGTGCCCACCTAATCACTACAATGATCTTGCCAGCCTCATTTTCAACACAAATGATGACGCTATTAGAAATCTATTTAGCAAGAATACCGACGATGAGTTTGAGTTTAAATCAGTGTTCATCTTTTTCATCACTTGCTTTTCTTTAAGTATCTTTAGCTATGGAGTTGTTGCTCCAGCTGGTCTATTTGTGCCAGTTATTGTGACTGGTGCATCTTATGGGCGTATTGTTGGAATGTTGCTTGGCAAAAAGGACAGTCTTAGCCATGGTCTTTATGCTGTACTTGGTGCTGCTTCCTTTCTCGGTGGCTCCATGAGGACAACAGTTTCTTTGTGTGTAATTATTCTAGAACTGACCAATAACCTGTTATTGCTACCCCTAATCATGATGGTGCTGTTCATTTCTAAGACTGTAGCAGATGCTTTCAATGCAAATATATATGACATTATAATGAAAGCCAAGGGTTTGCCTTATTTAGAAACTCATGCTGAACCATATATGAGGCAGCTATCAGTAGGCGATGTAGTCACAGGCCCACTTCAGACATTTAATGGGGTTGAGAAGGTTTGCAACATAGTGTTTATTCTCAGAACTACGGGACATAATGGGTTTCCCGTTATAGACGAGCCTCCTATTTCGCAAGCTCCAGTTTTATTTGGCATAATCCTCCGTGACCATCTTCTCACATTGTTGAAGAAGAAAGCTTTTATGTCCTCACCTATGGCAACAAGTGGTGATGTCATCAATGAGTTTTCAGCAGATGATTTTGCAAAGAAGGGTTCAAGCAAAGGTCGTCTAAAGATAGAGGATATACAGTTATCAGAGGAAGAGATGGACATGTTCATAGATCTACATCCATTTACTAATGCTTCTCCTTATACTGTTGTGGAGACAATGTCACTGGGAAAGGCCCTTACACTTTTCCGAGAGCTAGGTTTAAGGCATCTGCTAGTGGTACCCAAGTTCTCCGGTAGATCACCTGTGGTGGGTATACTCACACGACACGATTTCATGTCAGAACATATATTGGGTTTGCATCCCTTTCTGGTAAGAAACACAGGGAAAAGTTTAAGATTTTAA 2298 0.4221 MSTNYSTNGDSETLLRRPLLSSQRSIVNSTSQVAIVGSNVSPIESLDYEIFENEFFKHDWRSRGKAQIFQFMIMKWLLCLLIGMIVCLVGFCNNLAVENLAGIKFVVTSNMMLERRFLMAFLVFFVSNLVLTVFACTITALIAPTATGSGIPEVKAYLNGVDAPGIFTVRTLLVKIIGSITAVSSSLLIGKAGPMVHTGACVAALLGQGGSKRYGLTWKWLKFFKNDRDRRDLIICGSAAGIAAAFRAPVGGVLFALEGMSSWWRSALLWRAFFTAAIVAILLRALIDLCLSGKCGLFGKGGLIMFDAYSASISYHLVDVPPVFVLGVIGGILGSLFNLILSKVLRIYNFINEKGTIFKILLACVISIFTSCLLFGLPWLTSCRPCPPDPSEPCPTIGRSGIYKKFQCPPNHYNDLASLIFNTNDDAIRNLFSKNTDDEFEFKSVFIFFITCFSLSIFSYGVVAPAGLFVPVIVTGASYGRIVGMLLGKKDSLSHGLYAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLFISKTVADAFNANIYDIIMKAKGLPYLETHAEPYMRQLSVGDVVTGPLQTFNGVEKVCNIVFILRTTGHNGFPVIDEPPISQAPVLFGIILRDHLLTLLKKKAFMSSPMATSGDVINEFSADDFAKKGSSKGRLKIEDIQLSEEEMDMFIDLHPFTNASPYTVVETMSLGKALTLFRELGLRHLLVVPKFSGRSPVVGILTRHDFMSEHILGLHPFLVRNTGKSLRF* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1988 765 Gene3D Clc chloride channel 67 564 - -
Gso11g1988 765 SUPERFAMILY CBS-domain pair 568 745 IPR046342 -
Gso11g1988 765 Pfam CBS domain 697 745 IPR000644 -
Gso11g1988 765 PRINTS Plant CLC chloride channel signature 49 57 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso11g1988 765 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso11g1988 765 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso11g1988 765 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso11g1988 765 PRINTS Plant CLC chloride channel signature 416 432 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gso11g1988 765 Pfam Voltage gated chloride channel 133 546 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso11g1988 765 CDD CBS_pair_voltage-gated_CLC_euk_bac 568 746 - -
Gso11g1988 765 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso11g1988 765 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso11g1988 765 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso11g1988 765 PRINTS Chloride channel signature 464 484 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso11g1988 765 PRINTS Chloride channel signature 496 512 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso11g1988 765 PRINTS Chloride channel signature 514 533 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso11g1988 765 PRINTS Chloride channel signature 552 566 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gso11g1988 765 SMART cbs_1 585 638 IPR000644 -
Gso11g1988 765 SMART cbs_1 697 748 IPR000644 -
Gso11g1988 765 Gene3D - 565 746 IPR046342 -
Gso11g1988 765 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 11 760 - -
Gso11g1988 765 SUPERFAMILY Clc chloride channel 53 567 IPR014743 -
Gso11g1988 765 ProSiteProfiles CBS domain profile. 693 754 IPR000644 -
Gso11g1988 765 PANTHER CHLORIDE CHANNEL PROTEIN 11 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1988 Gso-Chr11 35395811 35401239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1988 8 764 Ion Channels AT5G33280 74.108 0.0 1123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1988 K05016 - gmx:100817901 1450.26