Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1970 ATGAATATGAAAGTTGTTGTGAGCATGGAGAACGAGAAGAAGTGCGGTTGCTGGGCTGTCCTCAAACGCGGCGTTAGAGCAACCGAGACAAGATACTTGAATGCTAGCAATCGAGAACTTTGTCCTCCAAATGAAGCTCGATTATCTTCTGATAATCCTGATCCCCCACCTCAAGAGAAAAAGGTTCCTTGCCAGCTCCTTCAATTTACATTTCAAGAACTAAAGGCTGCAACTGGAAATTTCAGACCTGATAGCATTCTTGGGGAGGGTGGCTTTGGTTATGTTTTCAAAGGTTGGATTGAGGAAGATGGAACGGCGCCAGCGAAACCCGGGTCAGGGATTACAGTGGCTGTCAAAAGCTTGAAGCCAGATGGCCTTCAAGGCCATAGAGAATGGGTGGCTGAAGTTGACTTTCTTGGACAGCTTCACCATCCTAACCTTGTGAAACTTATTGGTTATTGCATTGAAGATGATCAGCGGCTTCTTGTTTACGAGTTTATGACCCGTGGAAGTCTAGAAAATCATCTATTCAGAAGAACCGTACCTCTTCCGTGGTCCAACAGGATTAAGATTGCCCTTGGTGCAGCAAAAGGATTGGCCTTCCTCCATAATGGTCCCGAACCAGTCATTTATAGAGATTTTAAAACATCTAACATCTTGCTTGATACGGAGTATAATGCGAAGCTTTCAGATTTTGGTCTAGCAAAAGCAGGGCCTCAAGGAGACAAAACACATGTTTCTACCAGGGTAGTTGGAACTTATGGTTATGCTGCTCCAGAATATGTCATGACAGGACACTTGACAGCTAAAAGTGATGTTTATAGCTTTGGAGTTGTGTTACTTGAGATATTAACAGGAAGAAGATCAATGGACAAGAAGCGCCCGAGTGGGGAACAAAATCTTGTTTCATGGGCTAGGCCATACTTAGCTGACAAGCGAAAACTGTACCAACTCGTGGATCCTCGCCTTGAACTAAATTATTCTCTAAAAGGAGTGCAGAAGATTTCCCAGTTAGCTTATAATTGCCTTAGTAGAGACCCCAAATCCCGTCCTAACATGGATGAAGTTATGAAGGCTCTGACTCCATTGCAGGATTTTAATGACCTTGCAATCTTGTCTTATCACTCTCGCTTATCTCAACAAGGGAGGCGGAAGAAGAAAGATGGAACTCCACAGATCACATACACACAATCCAAGAGCATGAGGGCTTCTCCCTTGAATACTGGCAAGCAGCATCGATGA 1242 0.4404 MNMKVVVSMENEKKCGCWAVLKRGVRATETRYLNASNRELCPPNEARLSSDNPDPPPQEKKVPCQLLQFTFQELKAATGNFRPDSILGEGGFGYVFKGWIEEDGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRIKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKGVQKISQLAYNCLSRDPKSRPNMDEVMKALTPLQDFNDLAILSYHSRLSQQGRRKKKDGTPQITYTQSKSMRASPLNTGKQHR* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1970 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Gso11g1970 413 Gene3D Phosphorylase Kinase; domain 1 57 166 - -
Gso11g1970 413 ProSiteProfiles Protein kinase domain profile. 81 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1970 413 MobiDBLite consensus disorder prediction 391 413 - -
Gso11g1970 413 PANTHER OS01G0588500 PROTEIN 58 383 - -
Gso11g1970 413 Gene3D Transferase(Phosphotransferase) domain 1 167 377 - -
Gso11g1970 413 CDD STKc_IRAK 87 363 - -
Gso11g1970 413 ProSitePatterns Protein kinases ATP-binding region signature. 87 119 IPR017441 GO:0005524
Gso11g1970 413 MobiDBLite consensus disorder prediction 377 413 - -
Gso11g1970 413 SUPERFAMILY Protein kinase-like (PK-like) 63 365 IPR011009 -
Gso11g1970 413 PANTHER OS01G0588500 PROTEIN-RELATED 58 383 - -
Gso11g1970 413 Pfam Protein tyrosine and serine/threonine kinase 85 360 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1970 Gso-Chr11 35133475 35137721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1970 69 360 Glycoside Hydrolase AT3G07070 55.743 2.17e-110 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso11g1970 PK_Tyr_Ser-Thr 4.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1970 - - gmx:100305441 833.943