Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1965 ATGGGAAGGAAAAAGACAGAGGATGCTGGCCCATCTGCTAAGGTCAAGGCTAGTAGCAAAGATCCTGCTAAGAAGGAAAAAATTTCTGTCTCTGCCATGCTGGCCAGTATGGATGAAAAGCCTGATAAACCTAAAAAAGTCTCTTCTTCCTCCAGTAAGCCGAAGCCCAAATCTGCTCCAAAAGCTTCCACATACACCGATGGTATTGATCTTCCTCCATCCGATGATGAAGATGATGATCTCTTGGAAGAGGAGGAAGCCAAAAGGTCCAGTCAGCAGCAGCAAAGGCCTGGTTTGAAGCCACTTGATGTGCCTATTGCTGAGAAGGAGTTGAAAAAGCGTGAAAAGAAGGATCTTTTAGCAGCACATGTTGCTGAGCAGGCAAAGAAGGAGGCTCTCAAGGATGATCACGATGCTTTCACTGTGGTCATTGGAAGCCGGGCTTCGGTGCTTGATGGAGGAGATGATGCTGATGCTAATGTCAAAGATATAACAGTAGAAAATTTCTCCGTGTCTGCACGGGGTAAAGAACTTCTGAAAAATGCAACGGTGAAGATATCTCATGGAAAGAGGTATGGTTTGGTTGGGCCCAACGGAAAGGGCAAGTCCACGCTGTTGAAGCTTCTTGCTTGGAGGAAGATACCGGTACCTAAGAATATTGATGTCCTTCTGGTTGAACAGGAGGTAGTTGGTGATGATAAAACAGCTCTTGAAGCTGTTGTTTCTGCTAATGACGAACTTGTTAAAATTCGACAAGAAGTTGCCTCTCTGCAGAATGCAGCTTCTGTTGAAGACAAAGATAATGATGAGGAAGACGATACAGGAGAGAAGCTAGCAGAGCTATATGAAAAACTACAGCTGATGGGATCTGATGCTGCTGAAGCTCAAGCATCAAAGATATTAGCTGGTTTAGGTTTTACAAAGGATATGCAAGCCCGTCCTACAAAATCCTTTAGTGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAACCAACTCTATTATTGCTTGATGAACCCACAAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTATTTGTGCCGTTGGAAGAAAACTCTGGTGGTTGTCTCACATGATAGGGATTTTCTCAACACAGTGTGTACTGAGATTATTCATCTCCATGATTTGAAACTTCATTTCTATCGTGGAAATTTTGATGATTTTGAGAGCGGGTATGAACAGCGTCGTAAAGAGATGAATAAGAAGTATGATATTTATGCCAAGCAATTGCAAGCGGCTAAGAGGAGTGGAAACCAGGCTCAGCAAAAAAAAGTTAAGGATCAAGCTAAGTTTGCAGCAGCTAAGGAAAAAAGCAAGGGCAAGGGCAAGGGCAAGGTTGATGAGGATGAGGCCCCACCAGAGGCACCTCAGAAGTGGAGGGATTACAGTGTGGAGTTTCACTTTCCTGAACCTACTGAGCTCACACCCCCACTTCTGCAGCTTATTGAAGTCAGCTTTAGCTACCCAAACCGGGAAGATTTCAGGCTCTCAAATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCTACGTTGTTGAATCTTCTAGCTGGTGATTTGGTTCCTTCTGAGGGTGAAGTTCGAAGGAGTCAGAAGTTGAGGATAGGAAGATATTCCCAACACTTTGTGGACCTTCTAACAATGGATGAAACAGCTGTGCAGTATCTTCTGCGTCTCCATCCAGATCAGGAGGGACTTAGCAAGCAGGAGGCTGTCCGTGCAAAACTTGGTAAGTTTGGGCTACCAAGTCATAACCATCTTACTCCTATTGCCAAACTATCAGGAGGGCAGAAAGCTCGGGTGGTCTTCACATCTATCTCCATGTCAAATCCACACATTTTATTGTTAGATGAACCCACCAATCATCTGGACATGCAAAGTATTGATGCATTGGCCGATGCACTGGATGAATTCACCGGTGGAGTTGTTCTTGTTAGTCATGATTCAAGATTGATATCACGTGTATGTGAGGATGAAGAAAGGAGTCAAATCTGGGTTGTCGAAGATGGTACTGTCAAAAATTTCCCAGGAACATTTGAGGATTACAAGGACGACTTGCTGAGAGAGATTAAAGCTGAAGTTGATGATTGA 2163 0.4424 MGRKKTEDAGPSAKVKASSKDPAKKEKISVSAMLASMDEKPDKPKKVSSSSSKPKPKSAPKASTYTDGIDLPPSDDEDDDLLEEEEAKRSSQQQQRPGLKPLDVPIAEKELKKREKKDLLAAHVAEQAKKEALKDDHDAFTVVIGSRASVLDGGDDADANVKDITVENFSVSARGKELLKNATVKISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANDELVKIRQEVASLQNAASVEDKDNDEEDDTGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKDMQARPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYDIYAKQLQAAKRSGNQAQQKKVKDQAKFAAAKEKSKGKGKGKVDEDEAPPEAPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEVRRSQKLRIGRYSQHFVDLLTMDETAVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSNPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEERSQIWVVEDGTVKNFPGTFEDYKDDLLREIKAEVDD* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1965 720 CDD ABCF_EF-3 164 391 - -
Gso11g1965 720 MobiDBLite consensus disorder prediction 428 472 - -
Gso11g1965 720 MobiDBLite consensus disorder prediction 1 106 - -
Gso11g1965 720 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 5 720 - -
Gso11g1965 720 Coils Coil 410 430 - -
Gso11g1965 720 Pfam ABC transporter 179 346 IPR003439 GO:0005524
Gso11g1965 720 Pfam ABC transporter 510 645 IPR003439 GO:0005524
Gso11g1965 720 ProSitePatterns ABC transporters family signature. 318 332 IPR017871 GO:0005524
Gso11g1965 720 CDD ABCF_EF-3 493 695 - -
Gso11g1965 720 Coils Coil 240 260 - -
Gso11g1965 720 SMART AAA_5 519 695 IPR003593 -
Gso11g1965 720 SMART AAA_5 188 390 IPR003593 -
Gso11g1965 720 Gene3D - 458 719 IPR027417 -
Gso11g1965 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 398 IPR027417 -
Gso11g1965 720 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 164 421 IPR003439 GO:0005524
Gso11g1965 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 472 706 IPR027417 -
Gso11g1965 720 Gene3D - 161 453 IPR027417 -
Gso11g1965 720 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 493 718 IPR003439 GO:0005524
Gso11g1965 720 PANTHER - 5 720 - -
Gso11g1965 720 MobiDBLite consensus disorder prediction 442 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1965 Gso-Chr11 35042607 35045513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1965 492 671 Calmodulin-binding Proteins AT2G36910 31.068 7.44e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1965 K06184 - gmx:100806865 1291.17