Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1961 ATGTCGAGCTGCAGCATCGATGTTGCGCCTGAGCAACTCTGCTACATCCCCTGCAACTTCTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCCTGTTTGACATTGTGACCGTTCGATGTGGGCACTGCACCAATCTATGGTCCGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGGATCTGGGCACTGCAATCCAGAGTACAGGATTGACACTGGCTCCACGTCCAAATGCAACAATAGGATTGCAATGCGTGCGCCCACCACTCATGTAACTGAGGAAAGGGTTGTGAACAGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAACCAGTTTATAAAGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCATAGAGAAGCTTTCAGTACAGCTGCAAAGAACTGGGCACATTTTCCCCATATTCATTTCGGGCTGATGTTGGAGAGCAACAACCAAGTTAAGATGGAGAATGTTTCTGAGAAGCATTTAATGTCAAGGGCTGCGCTATTGAATAAATGA 561 0.4777 MSSCSIDVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQGSGHCNPEYRIDTGSTSKCNNRIAMRAPTTHVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQVKMENVSEKHLMSRAALLNK* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1961 186 Pfam YABBY protein 9 159 IPR006780 GO:0007275
Gso11g1961 186 SUPERFAMILY HMG-box 103 152 IPR036910 -
Gso11g1961 186 Gene3D High mobility group box domain 98 155 IPR036910 -
Gso11g1961 186 PANTHER AXIAL REGULATOR YABBY 5 1 176 - -
Gso11g1961 186 PANTHER PROTEIN YABBY 6-RELATED 1 176 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1961 Gso-Chr11 34950454 34954616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1961 8 169 C2C2-YABBY Transcription Factor Family AT2G26580 77.160 8.59e-92 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gso11g1961 YABBY 1.6e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1961 K25796 - gmx:100804731 389.423