Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1959 ATGGCTTTCCACGACCATCTCCAGCACGAGATAGCGTTCCAGCGTTTCACGGAGGAGCAAGAGTTGAACGAGAATAGAGACATGCAGCAGAGGCTCCCACCTCCGACATGGCTCAACAACGTTAACGTCAACGCGCGTCAACAGAATTTCCTCGACAGCGAGAAGAGCGTGGATCGGAACCGAAGCGAGAGCAATTGCGAATCCGAGGATTTGAGGGAATACAAAGCGGACATTCTAGGACACCCTCTCTACGATCAACTGCTATCGGCGCACGTGTCGTGCCTCAGAATCGCTACGCCCGTGGACCAGCTTCCTAGGATCGACGCCCAGCTTCAGCAGTCGCAGCGCGTGGTTGAAAAGTACTCTGCACTTGCACACAACGGGGTCGTCGATGAGAAGGAGCTTGATCAGTTCATGACCCATTATGTTCTGTTGCTCTGTGCCTTTAAAGAACAACTGCAGCAGCATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTGGAGCAGTCTCTGCAAAGCTTGACAGGTGTATCTCCTGGTGAAGGAACGGGTGCAACAATGTCAGACGATGAAGATGACCAGGCAGAGAGCAATGCCAACTTATACGAAGGAAGCCTTGATGGGGGTGAAACTCTTGGATTTGGTCCTCTTGTCCCCACTGAAAGTGAAAGATCTTTGATGGAGAGAGTGAGGCATGAATTGAAGCATGAACTAAAACAGGGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGACGAGCAGGGAAACTTCCAGGGGACACCACATCCCTTTTGAAAGCTTGGTGGCAGTCACATTCTAAATGGCCTTACCCCACTGAGGAAGACAAGGCTAGGTTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAGAGGAAAAGGAACTGGCATACTAATAACCCCTCATCCTCTAGTAACTCCAAAAGCAAGCGCAAGAGTAGTGCAGGAGAAACCAGTAACCAGAGCTTCATGTGA 1041 0.4938 MAFHDHLQHEIAFQRFTEEQELNENRDMQQRLPPPTWLNNVNVNARQQNFLDSEKSVDRNRSESNCESEDLREYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSALAHNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDDQAESNANLYEGSLDGGETLGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNNPSSSSNSKSKRKSSAGETSNQSFM* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1959 346 MobiDBLite consensus disorder prediction 179 199 - -
Gso11g1959 346 SMART KNOX1_2 72 116 IPR005540 GO:0003677|GO:0005634
Gso11g1959 346 SMART HOX_1 259 324 IPR001356 GO:0003677
Gso11g1959 346 Pfam Homeobox KN domain 277 316 IPR008422 GO:0003677|GO:0006355
Gso11g1959 346 SMART KNOX2_2 125 180 IPR005541 GO:0003677|GO:0005634
Gso11g1959 346 ProSiteProfiles 'Homeobox' domain profile. 257 320 IPR001356 GO:0003677
Gso11g1959 346 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 23 339 - -
Gso11g1959 346 CDD homeodomain 260 320 IPR001356 GO:0003677
Gso11g1959 346 Pfam ELK domain 237 258 IPR005539 GO:0003677
Gso11g1959 346 Pfam KNOX2 domain 130 179 IPR005541 GO:0003677|GO:0005634
Gso11g1959 346 SUPERFAMILY Homeodomain-like 259 324 IPR009057 -
Gso11g1959 346 ProSiteProfiles ELK domain profile. 237 257 IPR005539 GO:0003677
Gso11g1959 346 Pfam KNOX1 domain 74 115 IPR005540 GO:0003677|GO:0005634
Gso11g1959 346 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 23 339 - -
Gso11g1959 346 SMART ELK_2 237 258 IPR005539 GO:0003677
Gso11g1959 346 MobiDBLite consensus disorder prediction 314 346 - -
Gso11g1959 346 Gene3D - 258 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1959 Gso-Chr11 34891688 34901020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1959 74 343 Homeobox Transcription Factor Family AT5G11060 83.516 4.35e-166 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso11g1959 KNOX2 3.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1959 - - gmx:100803673 691.419