Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1954 ATGCCGGACGGAGAATCCTCTGCCGTCGCCGGCGGCCAAGTTTCCATGGAACCCTCTTTAAGCCTCTCCGATCAACTACAGTCCCTGAGTCTTTCCCAAGTAAAAAATCATGATGACTCGGTCAAGAAAGATCCCCGGAAGATTGCAAGAAGGTATCAGTTGGAGTTGTGCAAAAAAGCTATGGAGGAAAATATAATTGTGTATTTAGGGACAGGGTGTGGGAAGACCCACATTGCTGTGCTTCTTATGCATGAGATGGGTGATTTGATTCGGAAACCACAGAAGAACATATGTGTCTTTCTTGCTCCCACTGTGGCTTTAGTCCATCAGCAAGCAAAGGTTATAGCAGACTCTACTGATTTTAAGGTTGGGACATACTGTGGAAGTTCCAAGCGCTTGAAACATCATCAAGACTGGGAGCAGGAGATGGGACAATATGAGGTTCTTGTTATGACCCCACAAATATTACATCATAACTTATCCCATTGCTTCATCACAATGGAGATGATTGCACTTTTGATATTTGACGAATGTCATCATGCTCAAGTCAAAAGCAACCATGCTTATGCAGTAATCATGAAAGTCTTCTACAAAAGTAATTCCACAAAGGTTCCCCGTATATTTGGCATGACTGCTTCCCCTGTTGTAGGAAAAGGTGCTTCTAGTGAAGCAAATTTAGCAAAAAGCATCAACAGTCTTGAACATATACTTGATGCCAAGGTATACTCTGTTGAAGACAAGGAATTGCAATCTTTTGTGACCACTCCTGTGATTAATATATATCATTATGTTTCAACTGCAAGTGGGGAAACTAGCTTGCACTTGAAAATTGAGGAGATTAAACGCCAGTGCATAGCAACCCTTGGTAGGAGTATAGAAGATCACCAGAAACGGATGAATACAAAGAAACTTCTGAACCGGATGCATGATAATGTGATTTTCGGTCTGCAGAATCTTGGCATTTGGGGAGCATTGCAAGCTAGTCATATTCTTCTGAGTGGTGATCATTCTGAGAGGCATGAATTAGTGGAGGCAGATGGAAATTCAAGTGATGACTCTCTGTGTGATAAATATCTTGCTCAGGCTGCTGAACTATTTACTTCACAATGCATGATAGGCGACAGGGTAACTGATTTATCTTCTGTGGAAATATTAAAAGAGCCATTTTTCTCAGCAAAGCTTTTACGACTCATTGGGATACTATCCAACTTTAGGTTGCAAAAGAACATGAAATGTATAATTTTTGTGAATAGAATTGTGACAGCAAGATCCCTGTCATACATACTACAGAAGCTCAAGCTTCTAAGACAATGGAGGAGTGATTTTCTAGTAGGAGTCCATGCTGGACTGAAGAGTATGTCACGAAAGACCATGAACATCATTGTTGATAAATTTCGTTCTGGAGAGTTGAATCTACTGGTTGCAACCAAAGTGGGTGAAGAAGGACTTGACATTCAGACATGTTGTCTCGTCATACGATTTGATCTTCCAGAAACTGTTGCCAGCTTCATACAGTCAAGAGGTCGTGCACGTATGCCTCAGTCAGAATATGCATTTTTGGTGGACAGTGGCAATAAGAAGGAAATTGACGTAATTGATGGTTTCAAGGAAGATGAATACCGAATGAATATGGAAGTTACTTTTCGAACATCCAAGGAGACATACATCATCCCTGAGGAAAGAATATTCAGAATTGATTCGTCTGGTGCTTCTGTTAGTTCTGGATATAGTATCTCATTGCTTCACCAATATTGTTCAAAGCTTCCACACGATGAGTACTTTGACCCCAAGCCAAGTTTTCATTACTTAGATGATTCAGGGGGAATTTCCTGCCACATAACATTGCCTTCCAATGCACCAATAAACCAAATTTTGGGTACACCACAGTTATCTATGGAGGCTTCCAAAAGAGAAGCTTGCCTGAAAGCAATAGAAGAACTGTATAATTTAGGCGCTTTAAGTGATTGTCTCTTGCCAAAACAAGATGATGCAGAGCCTGAGGTACAGGTTTCAGGCTCTTCTGATGAAGATGAATGTGAAGATGCCATATCAAGAGGAAAATTACATGAGATGCTAGTTCCTTCTGCCTTTGGACAGTCATGGATAAATGAGGATAACATTGTCCGTCTCAACTCTTACTACATAAAATTTTGTCCCTATCCAGAGGACAGGGTCTACAAAGAGTTTGGTCTATTCATGATGGCCTGTCTTCCGATGGAGGCTGAGAAATTGGAACTTGATCTCCATCTTGCTCATGGTCGATCTGTGATGACAATATTTGTCCCATTTGGAGTTGTAGAATTTAACAAAGATGAGATTAAGATGGCAGAGAATTTTCAAGAAATGTTCCTCAAAATTATTCTTGATAGATTAGAATTCATTTCCGAGTTTGTAGACTTGGGTATGAGTGCTGAATCTCACTCAGGCACATCAACCTTCTACCTTTTGCTTCCAGTTGTATTGCAAGAATATGGAAATGCCATGGAAGTAGATTGGAAGATAGTGAAGAGATGCCTTTGTTCACCAATTTTCAGGCATCCAGCTGATACTATGGATAAAAAAGTTTTCCCTTTAGATATTCACCTGCAACTTGCCAATGGTTACAGAAGTGTAAGAAATGTCGAGAATAGTTTAGTGTATGCCCCACATAAGAAGAACTTTTATTTTGTCACGAATGTTAACTATGAAAAGAATGGATATAGTCCTCATAATGATTCAGGCACTTCAAGCTATGTGGATTACTTCATTGAAAAGTTTTCCATTCACCTCAAATGTCCGAAGCAACCACTTCTGCATGTGAAACCGGTCTCCAATTTGCACAACCTGTTACACAACAGAAAGCGTGAGGATGCAGAACCACAGGAGCTGGACGAATACTTAATTTATTTGCCTCCTGAGCTTTGTGAACTAAAAGTAATAGGTTTTTCGAAGGATATTGGCAGTTCCATATCTTTGCTGCCCTCAATTATGCATCGTCTTGGAAACTTGCTGGTGGCTATTGAACTAAAGCACATGCTATCTTCTTCCTTTCCAGAAGCAGCTGAAATTAGTGCCATTAGAGTTTTAGAGGCTCTCACCACTGAGAAGTGTCAGGAGCGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTCCTTAAATTTGCTGTTGCACGTCATTTTTTTCTCATGCATGACAGCCTTCATGAAGGAGACCTTACAAAAAGGCGTTCCAATGCTGTAAATAATTCCAATTTGTTTAAGTTGGCTATTAAGCGCAATTTGCAGGTCTATATATGCAATCAGACATTTGATCCCACTCAGTTTTATGCATTGGGCCGTCCTTGCCCAAGAGTTTGTAGCAATGAAACCGAAGAAAGCATACACTTTTGTTTAAATTCTGTTATGCAACAAGGAAAAGCAACTGAAACCCGATGTAGCAAAAATCATCATTGGTTACATAGGAAAACAATTGCTGATGTGGTTGAAGCTCTGGTTGGAGCATTCCTAGTTGACAGTGGCTTTAAAGCTGCAATTGCCTTTCTTTCATGGATTGGCATACAAGTTGATTTTGAAGCTTCACAAGTGGTTGATATCTGCATAGCAAGTGCTAGCTATTCCCCTCTTTCTTCTGAAGTAGACATTCCTTCTCTTGAAGGTAAGCTAGGACATCACTTTTTTCATAAAGGTCTGCTTCTCCAGGCATTTGTACATCCTTCTTACAATAAGCTTGGAGGAGGCTGTTATCAGCGATTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTACTTCATATCTATTCTCAGCTTATCCCAAACTAAAGCCTGGTCAATTGACAGATTTGAGATCATTGTCTGTTAACAACAAGGCATTTGCTTGTCTAGCGGTAGATCGCAGTTTTGATAATTTTCTTTTATGTGATTCAAGTGGCCTGTCTGAGGCAATAAAAAAGTATGTGGACTATGTTAGAAGACCTGTGTCAGATAATGGCATTAAAGAAGGGCCAAAATGTCCCAAGGCACTGGGTGACTTAGTGGAATCTTGTGTTGGTGCCATCCTTCTTGATTCAGGGTTCAATTTGAACAAAGTTTGGAAGATTATGACTTCATTCTTGGACCCAATCATGAAATTCTCATCAAGCTTGCAGCTCAGTCCTGTTAGGGATTTGCGAGAACTTTGCCAATCTCATAATTTGGAGTTGGAGTTTCTGCCAGTGCCCTCAAAATTGACTAAAAGGTTTTCAGTTGAAGCTAAAGTGAGTGGGAATGGTGTATGTGAAACAGCTTCAGCAACTGGCCAAAATAAAAAAGAGGCTTGCAGAATTGCTTCACAGCTACTTTTTTTAAAGTTCAAGGCTCAAGGTTGGAAAGCTAAGTCAAAAACCCTGGAAGAAGTTCTGGAATCAACTTCTAAAATGGAACCAAAACTTATTGGCTATGATGAAACTCCCATTGATGTAACAGATACCAATACTGCCAAGCACATAGTGGTTAATGCTGACCCGTACAACAACTCTAACCCAGAAATTTGCCCTATGCAACTGACAGATGAAATATGCTCTCCATGTGTGAAACCTTTTGGCCAACGGCTTCAATCTTCTGCTAAGGGAAAGCTTAGTCAAATATTTGAAAATCGTGATTGTGGCAGTGACTCGTCTGGGACAGGAACAGCAAGATCACGATTGTATGAATTATGTGCTGCGTATTGCTGGAAACCTCCTTCATTTGAATGCTGCAAGAAAGAGGGACCAGACCACCTGAAACAATTTACTTGCAAGGTGACCTTAGAGATAGAAGAGGCCCAGAATTTGATTTTAGAGTTTGTTGGGGAACCTCTGTCAAAGAAGAAAGATGCAGCAGAGAGTGCGGCAGAGGGTGCATTATGGTATCTACAACATGAAGGTTTCTTGCCTAGTAGTGGTAATTGA 4914 0.4037 MPDGESSAVAGGQVSMEPSLSLSDQLQSLSLSQVKNHDDSVKKDPRKIARRYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMHEMGDLIRKPQKNICVFLAPTVALVHQQAKVIADSTDFKVGTYCGSSKRLKHHQDWEQEMGQYEVLVMTPQILHHNLSHCFITMEMIALLIFDECHHAQVKSNHAYAVIMKVFYKSNSTKVPRIFGMTASPVVGKGASSEANLAKSINSLEHILDAKVYSVEDKELQSFVTTPVINIYHYVSTASGETSLHLKIEEIKRQCIATLGRSIEDHQKRMNTKKLLNRMHDNVIFGLQNLGIWGALQASHILLSGDHSERHELVEADGNSSDDSLCDKYLAQAAELFTSQCMIGDRVTDLSSVEILKEPFFSAKLLRLIGILSNFRLQKNMKCIIFVNRIVTARSLSYILQKLKLLRQWRSDFLVGVHAGLKSMSRKTMNIIVDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNKKEIDVIDGFKEDEYRMNMEVTFRTSKETYIIPEERIFRIDSSGASVSSGYSISLLHQYCSKLPHDEYFDPKPSFHYLDDSGGISCHITLPSNAPINQILGTPQLSMEASKREACLKAIEELYNLGALSDCLLPKQDDAEPEVQVSGSSDEDECEDAISRGKLHEMLVPSAFGQSWINEDNIVRLNSYYIKFCPYPEDRVYKEFGLFMMACLPMEAEKLELDLHLAHGRSVMTIFVPFGVVEFNKDEIKMAENFQEMFLKIILDRLEFISEFVDLGMSAESHSGTSTFYLLLPVVLQEYGNAMEVDWKIVKRCLCSPIFRHPADTMDKKVFPLDIHLQLANGYRSVRNVENSLVYAPHKKNFYFVTNVNYEKNGYSPHNDSGTSSYVDYFIEKFSIHLKCPKQPLLHVKPVSNLHNLLHNRKREDAEPQELDEYLIYLPPELCELKVIGFSKDIGSSISLLPSIMHRLGNLLVAIELKHMLSSSFPEAAEISAIRVLEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLMHDSLHEGDLTKRRSNAVNNSNLFKLAIKRNLQVYICNQTFDPTQFYALGRPCPRVCSNETEESIHFCLNSVMQQGKATETRCSKNHHWLHRKTIADVVEALVGAFLVDSGFKAAIAFLSWIGIQVDFEASQVVDICIASASYSPLSSEVDIPSLEGKLGHHFFHKGLLLQAFVHPSYNKLGGGCYQRLEFLGDAVLDYLITSYLFSAYPKLKPGQLTDLRSLSVNNKAFACLAVDRSFDNFLLCDSSGLSEAIKKYVDYVRRPVSDNGIKEGPKCPKALGDLVESCVGAILLDSGFNLNKVWKIMTSFLDPIMKFSSSLQLSPVRDLRELCQSHNLELEFLPVPSKLTKRFSVEAKVSGNGVCETASATGQNKKEACRIASQLLFLKFKAQGWKAKSKTLEEVLESTSKMEPKLIGYDETPIDVTDTNTAKHIVVNADPYNNSNPEICPMQLTDEICSPCVKPFGQRLQSSAKGKLSQIFENRDCGSDSSGTGTARSRLYELCAAYCWKPPSFECCKKEGPDHLKQFTCKVTLEIEEAQNLILEFVGEPLSKKKDAAESAAEGALWYLQHEGFLPSSGN* 1638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1954 1637 Gene3D - 47 284 IPR027417 -
Gso11g1954 1637 CDD RIBOc 1225 1375 IPR000999 GO:0004525|GO:0006396
Gso11g1954 1637 ProSitePatterns Ribonuclease III family signature. 1244 1252 IPR000999 GO:0004525|GO:0006396
Gso11g1954 1637 SMART DRBM_3 1381 1447 IPR014720 -
Gso11g1954 1637 SMART DRBM_3 1553 1627 IPR014720 -
Gso11g1954 1637 CDD RIBOc 1022 1178 IPR000999 GO:0004525|GO:0006396
Gso11g1954 1637 SUPERFAMILY PAZ domain 870 970 IPR036085 GO:0005515
Gso11g1954 1637 Gene3D Ribonuclease III domain 1206 1377 IPR036389 GO:0004525|GO:0006396
Gso11g1954 1637 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1552 1628 IPR014720 -
Gso11g1954 1637 SUPERFAMILY dsRNA-binding domain-like 1335 1446 - -
Gso11g1954 1637 SMART ultradead3 45 250 IPR014001 -
Gso11g1954 1637 SMART helicmild6 423 513 IPR001650 -
Gso11g1954 1637 Pfam Ribonuclease III domain 1244 1353 IPR000999 GO:0004525|GO:0006396
Gso11g1954 1637 Pfam Ribonuclease III domain 1037 1168 IPR000999 GO:0004525|GO:0006396
Gso11g1954 1637 PANTHER DICER-LIKE PROTEIN 4 45 1630 - -
Gso11g1954 1637 Pfam Helicase conserved C-terminal domain 400 511 IPR001650 -
Gso11g1954 1637 Gene3D - 1559 1628 - -
Gso11g1954 1637 CDD DSRM_EIF2AK2-like 1379 1446 - -
Gso11g1954 1637 SUPERFAMILY RNase III domain-like 1208 1372 IPR036389 GO:0004525|GO:0006396
Gso11g1954 1637 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 577 667 IPR005034 GO:0016891
Gso11g1954 1637 SMART riboneu5 1224 1376 IPR000999 GO:0004525|GO:0006396
Gso11g1954 1637 SMART riboneu5 1019 1188 IPR000999 GO:0004525|GO:0006396
Gso11g1954 1637 CDD DEXHc_dicer 47 246 - -
Gso11g1954 1637 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 527 IPR027417 -
Gso11g1954 1637 PANTHER DICER-RELATED 45 1630 - -
Gso11g1954 1637 SUPERFAMILY RNase III domain-like 1021 1182 IPR036389 GO:0004525|GO:0006396
Gso11g1954 1637 Pfam PAZ domain 873 993 IPR003100 GO:0005515
Gso11g1954 1637 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1380 1448 IPR014720 -
Gso11g1954 1637 ProSiteProfiles Ribonuclease III family domain profile. 1023 1168 IPR000999 GO:0004525|GO:0006396
Gso11g1954 1637 SUPERFAMILY dsRNA-binding domain-like 1552 1633 - -
Gso11g1954 1637 MobiDBLite consensus disorder prediction 1 20 - -
Gso11g1954 1637 Gene3D - 386 547 IPR027417 -
Gso11g1954 1637 Gene3D Dicer dimerisation domain 573 668 IPR038248 -
Gso11g1954 1637 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1553 1627 - -
Gso11g1954 1637 ProSiteProfiles PAZ domain profile. 872 972 IPR003100 GO:0005515
Gso11g1954 1637 Gene3D Ribonuclease III domain 1017 1179 IPR036389 GO:0004525|GO:0006396
Gso11g1954 1637 SMART PAZ_2_a_3 850 998 IPR003100 GO:0005515
Gso11g1954 1637 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 232 IPR014001 -
Gso11g1954 1637 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 555 IPR001650 -
Gso11g1954 1637 ProSiteProfiles Ribonuclease III family domain profile. 1209 1353 IPR000999 GO:0004525|GO:0006396
Gso11g1954 1637 Gene3D - 1378 1457 - -
Gso11g1954 1637 CDD DSRM_DCL_plant 1559 1628 - -
Gso11g1954 1637 Pfam Dicer dimerisation domain 577 662 - -
Gso11g1954 1637 Gene3D paz domain 867 970 - -
Gso11g1954 1637 Pfam DEAD/DEAH box helicase 51 212 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1954 Gso-Chr11 34790396 34832626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1954 411 510 Eukaryotic Initiation Factors Gene Family AT3G19760 32.000 3.14e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1954 K11592 - gmx:100797277 3244.14