Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1950 ATGGCCTCTGATATCTCGTTTGAGGACCTCAAAAACGAGAATGTGGATCTTGAACACATTCCCATTGAGGAAGTTTTCAAGCAGCTAAAATGTACCAGAGAGGGTCTCACTTCAGCGGAAGGAGAGAAGAGGCTCCAAGTCTTTGGTCCCAACAAGCTAGAGGAGAAAACAGATAGCAAGTTACTTAAGTTCTTGGGTTTTATGTGGAATCCACTTTCATGGGTCATGGAAGTTGCTGCTATCATGGCCATTGTACTGGCCAACGGAGGGGGCAAGCCACCGGATTGGCAAGATTTTGTTGGTATTGTCGTGTTGCTCATCATCAATTCAACCATTAGTTTTATTGAGGAGAACAATGCAGGCAATGCCGCAGCAGCTTTAATGGCTGGTCTTGCACCCAAAACCAAGGTGTTGAGGGATGGAAAATGGAGTGAGGAGGAGGCAGCATTGTTGGTGCCAGGAGATTTGATCAGCATCAAGTTGGGAGATATTGTCCCAGCTGATGCTCGTTTATTGGAGGGAGATCCCCTGAAGATTGATCAATCTGCCCTCACAGGTGAGTCCTTGCCAGTCACCAAAAACCCTGGTAGTGAGGTCTTCTCTGGCTCCACCTGCAAACAAGGTGAGATAGAAGCTGTTGTCATTGCCACCGGTGTTCACACCTTCTTTGGCAAGGCTGCGCATCTTGTGGACAGCACCAACAATGTTGGTCACTTCCAAAAGGTGTTGACATCCATTGGAAACTTCTGCATCTGCTCAATTGCTATTGGAATGTTGATTGAGATTATTGTGATGTACCCCATCCAGCAAAGGGCCTACAGAGATGGTATTGACAATTTATTGGTTCTTCTCATCGGAGGTATCCCAATTGCCATGCCAACAGTCTTGTCTGTGACCATGGCTATTGGATCTCACCGCCTGTCTGAGCAAGGAGCCATCACCAAGAGGATGACAGCCATTGAAGAAATGGCTGGCATGGATGTCCTCTGCAGTGACAAGACCGGAACTCTCACCCTTAACAAGCTCACTGTGGACAAGAGCTTAATTGAGGTGTTCCCCACTGGCATGGACAAGGATACCCTTGTCTTATATGCTGCCAGGGCTTCCAGGACTGAAAACCAGGATGCCATTGATGCTTCAATTGTTGGAATGTTGAGTGACCCCAAGGAGGCAAGAGCAGGAATCACTGAGGTGCATTTCTTGCCCTTCAACCCCGTGGACAAGCGCACAGCTATTACCTATATTGATGGTCAAGGCAACTGGCACAGAAGTAGCAAGGGTGCCCCTGAGCAAATTATTGAGCTCTGTGAACTCAAGGGAGAGGTTTTGAAAAAGGCCCATAAAGTCATTGATGAGTATGCTAACCGTGGTCTGCGTTCATTGGGTGTTTCACGCCAGACTGTTTCAGAAAAGAACAAGGAGAGTGCAGGAGAATCATGGGAATTCTTGGGACTCTTGCCCCTCTTTGACCCTCCAAGGCATGACAGTGCCGAGACTATTCGTCGTGCTCTTGACCTTGGTGTCAACGTTAAGATGATCACTGGTGACCAACTTGCCATTGGAAAAGAAACCGGTCGCAGACTTGGAATGGGCACCAACATGTACCCTTCATCCTCTCTTCTTGGTAATAGCAAGGACCCTGCTATTGCATCAATCCCAGTGGATGAACTCATTGAGAAGGCTGATGGATTTGCCGGAGTCTTCCCTGAGCACAAATATGAGATCGTGAAGAGGCTGCAAGAAATGAAGCATATCTGTGGAATGACTGGAGATGGTGTGAATGATGCCCCTGCATTGAAGAAGGCAGACATTGGTATTGCAGTGGCTGATGCAACTGACGCAGCCAGAAGTGCCTCAGACATTGTTCTGACCGAGCCTGGACTTAGTGTGATCGTGAGTGCCGTGTTGACCAGCCGTGCCATCTTCCAGAGGATGAAGAACTACACAATCTATGCTGTCTCCATCACCATCCGTATCGTGTTTGGGTTCATGCTCGTTGCTCTTATCTGGAAGTTTGACTTCTCTCCTTTCATGGTCCTCATCATTGCCATCTTAAACGACGGAACCATCATGACCATCTCCAAGGATAGGGTGAAGCCTTCTCCTCTTCCTGACTCATGGAAGCTCAAGGAAATCTTTGCCACTGGAGTCGTTCTTGGAGCTTACATGGCCATCATCACTGTTGTGTTCTTCTTTTTGGTTCATGACACGGATTTCTTCACTAGAGTCTTTGGAGTCGAGCCAATTGTAGACAATGAAGAGCAGCTTAACTCAGCTCTCTACCTTCAAGTGAGTATCATTAGTCAAGCACTCATCTTCGTGACCAGGTCAAGGAGCTGGTCTTATGTTGAGCGCCCTGGCATTTTGCTTATCACAGCCTTCTTTGCTGCACAATTGGTGGCCACTGTGATTGCTGTGTATGCTCACTGGGACTTTGCTAGGGTCAATGGAGTTGGCTGGGGATGGGCAGGAGCAATTTGGGTCTTCAGCATTGTTACCTATATTCCTCTTGACATCCTTAAGTTCCTCATCCGCTTGGGGTTATCAGGCAGGGCATGGGACAACATGCTTGAGAACAAGACTGCATTCACAACAAAGAAGGACTATGGAAGGGGTGAAAGGGAAGCTGAATGGGCCGTGGCTCAGCGCACACTTCACGGTCTCCAAGTTGGAGAATCCAACAAGGCCAACCAACATGACCAGTCTGAAATCGCGGAACAGGCTAAGAGACGTGCTGAGGCTGCCAGGTTGAGGGAGCTCCACACACTCAAGGGACATGTTGAATCTGTTGTCAAGTTGAAGGGTATTGACATTGATACCATCCAGCAACACTACACCCTCTAA 2844 0.4807 MASDISFEDLKNENVDLEHIPIEEVFKQLKCTREGLTSAEGEKRLQVFGPNKLEEKTDSKLLKFLGFMWNPLSWVMEVAAIMAIVLANGGGKPPDWQDFVGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEEEAALLVPGDLISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPGSEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQKVLTSIGNFCICSIAIGMLIEIIVMYPIQQRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFPTGMDKDTLVLYAARASRTENQDAIDASIVGMLSDPKEARAGITEVHFLPFNPVDKRTAITYIDGQGNWHRSSKGAPEQIIELCELKGEVLKKAHKVIDEYANRGLRSLGVSRQTVSEKNKESAGESWEFLGLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGNSKDPAIASIPVDELIEKADGFAGVFPEHKYEIVKRLQEMKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGAYMAIITVVFFFLVHDTDFFTRVFGVEPIVDNEEQLNSALYLQVSIISQALIFVTRSRSWSYVERPGILLITAFFAAQLVATVIAVYAHWDFARVNGVGWGWAGAIWVFSIVTYIPLDILKFLIRLGLSGRAWDNMLENKTAFTTKKDYGRGEREAEWAVAQRTLHGLQVGESNKANQHDQSEIAEQAKRRAEAARLRELHTLKGHVESVVKLKGIDIDTIQQHYTL* 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1950 947 SUPERFAMILY Calcium ATPase, transmembrane domain M 15 846 IPR023298 -
Gso11g1950 947 ProSitePatterns E1-E2 ATPases phosphorylation site. 332 338 IPR018303 -
Gso11g1950 947 PANTHER CALCIUM-TRANSPORTING ATPASE 4 927 - -
Gso11g1950 947 PANTHER PLASMA MEMBRANE ATPASE 4 927 - -
Gso11g1950 947 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Gso11g1950 947 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Gso11g1950 947 CDD P-type_ATPase_H 35 842 IPR006534 GO:0008553|GO:0016021|GO:0120029
Gso11g1950 947 Gene3D - 133 217 - -
Gso11g1950 947 SUPERFAMILY Calcium ATPase, transduction domain A 133 230 IPR008250 -
Gso11g1950 947 Pfam E1-E2 ATPase 132 309 - -
Gso11g1950 947 Gene3D - 327 626 IPR023214 -
Gso11g1950 947 Gene3D - 342 489 IPR023299 GO:0000166
Gso11g1950 947 Gene3D - 95 816 - -
Gso11g1950 947 SFLD C1.7: P-type atpase like 312 641 - -
Gso11g1950 947 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 35 807 IPR006534 GO:0008553|GO:0016021|GO:0120029
Gso11g1950 947 Pfam haloacid dehalogenase-like hydrolase 326 603 - -
Gso11g1950 947 PRINTS H+-transporting ATPase (proton pump) signature 446 464 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso11g1950 947 PRINTS H+-transporting ATPase (proton pump) signature 561 577 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso11g1950 947 PRINTS H+-transporting ATPase (proton pump) signature 589 605 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso11g1950 947 PRINTS H+-transporting ATPase (proton pump) signature 620 645 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso11g1950 947 PRINTS H+-transporting ATPase (proton pump) signature 761 782 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso11g1950 947 SUPERFAMILY HAD-like 326 636 IPR036412 -
Gso11g1950 947 Gene3D - 897 947 - -
Gso11g1950 947 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 102 349 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso11g1950 947 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 564 675 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso11g1950 947 SFLD p-type atpase 312 641 IPR044492 -
Gso11g1950 947 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Gso11g1950 947 PRINTS P-type cation-transporting ATPase superfamily signature 330 344 - -
Gso11g1950 947 PRINTS P-type cation-transporting ATPase superfamily signature 484 495 - -
Gso11g1950 947 PRINTS P-type cation-transporting ATPase superfamily signature 506 516 - -
Gso11g1950 947 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Gso11g1950 947 PRINTS P-type cation-transporting ATPase superfamily signature 612 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1950 Gso-Chr11 34758974 34764017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1950 1 947 Primary Pumps ATPases AT3G42640 84.705 0.0 1639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1950 K01535 - gmx:100798717 1805.42