Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1945 ATGGTGGTGGGTGACCGTTTTCCGGTGGGTATGCGTGTACTTGCCGTTGATGACGACAAAACGTGTCTCACAGTTTTGGAGAACCTGCTTCGCAAATGCCAGTATAATGTCACTACAACTAATCAGGCAATTAAGGCGCTAGAAATGTTGAGGAAAAACAGAAACAAGTTTGACCTTGTTATTAGCGATGTAAATATGCCTGACATGGATGGGTTTAAACTTCTTGAGCTAGTGGGACTTGAAATGGACCTACCTGTTATTATGTTGTCAGGATACGGTGATAAAGAGCGGGTGATGAGAGGTGTTATACAGGGTGCTTGTGACTACTTAACCAAACCAGTTCGAATTGAAGAGTTACAGAACATATGGCAACATGTACTGCGAAGGAGGATTGATAGCAAGGATAAGAATAAGACTGCAAGTGAGGGAAAAGGCTGCAGTATGGCTGGTAAGTTTGCAAATGAGGAGAAAGCCAGATATATGGCTGGGGAATGTAGTCAAGCCATGGCACCAAAAAATAATACCGACCAGAATATAAAACTGGGTCAAAAAAGGAAGGAACTAAGTGAGGATGAGGAAGAGGAAGAATATGATAAAGAGAATGAGGAACACTCAAATCAGAAGAAGCCTCGTTTAGTTTGGGATGCCGAGTTGCATAGGAAATTTCTTGCTGCTGTTAATCATCTGGGAATTGACAAGGCTTTCCCCAAGAGAATACTCGACTTGATGAATGTCGAAGGACTTACAAGAGAAAACGTAGCAAGCCATCTGCAGAAATACAGACTCGGTCTCAGAAAACCTACTCAGCAGCCTAGCATGGTTGCTGCGTTGGGTAGTAGTGATCCTTACCTGCAGATGGATTCAGTAGAAGGCTTTCGCACTTTGTCGGGATCAGTAGGAATGTTAAGCACCACACTACCATCATATGCATCTGGTGGAGTGTTTTGTAGGCTGAACCCACCATCTGGCTTGAGAGGAGTTAACTCTGCACTTTTTCAGCCTGTTCTGTCTCAAAACAATAGCATGTCTGCAAAAGCATTTGGAAACATGCAACTGTCCATGTTTTCTGCAAATCAAACCTCAAGTTTATTACAGGGCATTCCAACATCAATAGATGCTAATAAATTTCAGCAGAACCGTTCACCTGGTATTAGGAAGTTGAGTCCACTTGATGATTCAAGTGGATTTAAAGTTTCCTCTGGTTTCTCAGACACTAGAGCTACCGTTATAAATCCAAATAATTTTGTGCATGATCTCTCAAATAATCATTTACTTTTACAAAGAAATTCACCACCAGCACAGAATTCGGGAGCATTCAGAAATCACTCTTCTCTTGGAGCTGCGTCGGTGAACACACAATCATTTGACCCTGGTATCTGTGAATTGGATCATAATCGGCATAATAAAAGCTGGCAGGGAACAACTCAGATATCTAAGTTTCCTACCAATACTTCTGCTGTCAGTAAGGTTTTCACTCATGATCAGCTGGCTCAAAATAACTCAAAATTTTCCTCATCCACTTTTTGCAGTGGGAACAGTCCAGTTGATTTTTCTTCCACTAGGGCTATTGCTCCTCCCTTGGAGGATGCTAGAGGTAAGCTGCAAAGTCAAGAAGGCTTACTTGAGAATATCTTACTAGCTTCATGTTACACCCAACATCAAAGCTGGGAATCAGATAAGCGGGGTTGCAACAAAGACATGAGCCAAACCTTCAACTCCACAAAGTCTGTCTCTCCTAATGGAGACACTAGTTCCTTAGGACATAGTTTAGACCAAAATAATTCAGTTAGCAGCGAGGGAATTGGTGCATCTTTGGTTAATCCATCAATCACGCAATCAAATGAAGGTGAGAAATTCTATTCGATGAAGTCAAATGATGCCTGCATTTTGCGGAGCATGGAGTCCCAAGAAGGACTCATGCAGAATACTTTTGGGTCCTTAAATGACATAATGAGTGAAATAACCGAACAGGAGCAAAATACGATTATGCTGATGGATGGAGAATTGGAGTTTGATTTGGATCATGCATTTGATTCCTTCTGA 2043 0.4175 MVVGDRFPVGMRVLAVDDDKTCLTVLENLLRKCQYNVTTTNQAIKALEMLRKNRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSGYGDKERVMRGVIQGACDYLTKPVRIEELQNIWQHVLRRRIDSKDKNKTASEGKGCSMAGKFANEEKARYMAGECSQAMAPKNNTDQNIKLGQKRKELSEDEEEEEYDKENEEHSNQKKPRLVWDAELHRKFLAAVNHLGIDKAFPKRILDLMNVEGLTRENVASHLQKYRLGLRKPTQQPSMVAALGSSDPYLQMDSVEGFRTLSGSVGMLSTTLPSYASGGVFCRLNPPSGLRGVNSALFQPVLSQNNSMSAKAFGNMQLSMFSANQTSSLLQGIPTSIDANKFQQNRSPGIRKLSPLDDSSGFKVSSGFSDTRATVINPNNFVHDLSNNHLLLQRNSPPAQNSGAFRNHSSLGAASVNTQSFDPGICELDHNRHNKSWQGTTQISKFPTNTSAVSKVFTHDQLAQNNSKFSSSTFCSGNSPVDFSSTRAIAPPLEDARGKLQSQEGLLENILLASCYTQHQSWESDKRGCNKDMSQTFNSTKSVSPNGDTSSLGHSLDQNNSVSSEGIGASLVNPSITQSNEGEKFYSMKSNDACILRSMESQEGLMQNTFGSLNDIMSEITEQEQNTIMLMDGELEFDLDHAFDSF* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1945 680 Pfam Response regulator receiver domain 13 121 IPR001789 GO:0000160
Gso11g1945 680 Gene3D - 10 145 - -
Gso11g1945 680 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 660 IPR045279 GO:0009736
Gso11g1945 680 Gene3D - 205 266 - -
Gso11g1945 680 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 265 IPR017930 -
Gso11g1945 680 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 209 262 IPR006447 GO:0003677
Gso11g1945 680 Coils Coil 183 203 - -
Gso11g1945 680 CDD REC_typeB_ARR-like 13 127 - -
Gso11g1945 680 MobiDBLite consensus disorder prediction 567 609 - -
Gso11g1945 680 SMART REC_2 11 123 IPR001789 GO:0000160
Gso11g1945 680 ProSiteProfiles Response regulatory domain profile. 12 127 IPR001789 GO:0000160
Gso11g1945 680 SUPERFAMILY Homeodomain-like 207 266 IPR009057 -
Gso11g1945 680 Pfam Myb-like DNA-binding domain 213 261 IPR001005 -
Gso11g1945 680 PIRSF RR_ARR_type-B 2 679 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gso11g1945 680 MobiDBLite consensus disorder prediction 171 208 - -
Gso11g1945 680 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 660 - -
Gso11g1945 680 SUPERFAMILY CheY-like 10 133 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1945 Gso-Chr11 34703978 34707700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1945 5 379 Response Regulator Gene Family AT2G25180 48.831 4.94e-106 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gso11g1945 Response_reg 1.5e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1945 K14491 - gmx:100795697 1334.32