Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1942 ATGTCTAGAAGACCCCCACTCCCTCGTCTCCTCCTTAACAATGTCTCTTGCATGAGAAATGCCCAGCAAGTTCTGCGCCATGTGAATGTCTCTCTTCATGATGGAGGGGCACTTGTGCTAACAGGTGCAAATGGCTCGGGAAAGACAACTTTCCTGCGCATGTTAGCTGGGTTTTCCCGCCCTTCTGCTGGTGAAATCCTTTGGAATGGACATGACATTCAACAATCTACAATATTCCATCAGTATAAACTTCAGCTTAACTGGCTCTCTCTCAAGGATGCCATTGATAATAAGATGTCAGTTCTTAACAATGTACAATGGTTTGAACTTCTTGAAAACAAGGAAGGGAAGGCTATGGCTGCACTAGAGTTGATGGGACTAGGAAGATTAGCCAACGAAAAACCAAGGATGCTATCTATGGGCCAGCGGAAAAGACTGCAACTTGCCAGATTGCTGGCACTTGATCGCCCCATATGGTTGCTAGATGAGCCTTCAGTTGCACTAGATGATGACGGTGTGAAGTTACTTGAGTATATTATTGCAGAACACAGGAAATATGGAGGAATTGTGATTGTGGCAACTCATCTACCCATTGAGATAGAAGATTCCTTAGTCTTGAGGCTTCCACCAAGGTTTCCAAGGAGGATGACCCTTGTGGATATGCTTGACCGGGCAGATATCAGTTAA 687 0.4498 MSRRPPLPRLLLNNVSCMRNAQQVLRHVNVSLHDGGALVLTGANGSGKTTFLRMLAGFSRPSAGEILWNGHDIQQSTIFHQYKLQLNWLSLKDAIDNKMSVLNNVQWFELLENKEGKAMAALELMGLGRLANEKPRMLSMGQRKRLQLARLLALDRPIWLLDEPSVALDDDGVKLLEYIIAEHRKYGGIVIVATHLPIEIEDSLVLRLPPRFPRRMTLVDMLDRADIS* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1942 228 PANTHER ABC TRANSPORTER I FAMILY MEMBER 1 8 222 IPR005895 GO:0017004|GO:0022857
Gso11g1942 228 Gene3D - 7 207 IPR027417 -
Gso11g1942 228 TIGRFAM ccmA: heme ABC exporter, ATP-binding protein CcmA 12 207 IPR005895 GO:0017004|GO:0022857
Gso11g1942 228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 199 IPR027417 -
Gso11g1942 228 SMART AAA_5 34 222 IPR003593 -
Gso11g1942 228 Pfam ABC transporter 25 165 IPR003439 GO:0005524
Gso11g1942 228 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 10 227 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1942 Gso-Chr11 34680196 34685020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1942 23 177 Calmodulin-binding Proteins AT2G36910 25.731 7.05e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1942 - - gmx:100796586 436.417