Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1927 ATGGCATTGGCGTTAGTGATAGACATAAGAAATGGAGTCTCTAGTTCTCGCGCAACATCCACAAGCGAGAATGGTGCCGTTGTCTTGAACAAAAAAGAAAAGGAGAGAAATCAAGAAGAACATATGGTGGTGCCTGAGTCTGAGATGAATTCCCAAAACGAGGTCGAATCGCCGCTACAATTGGAGCAGCAGCAACAACAACACAACAACAAGAACGATCCATTTTCATCACTGGGAAGACAATCTTCTTCGATATACTCCCTCACCCTTGACGAGTTCCAGCACACGCTATGGGAGAGTGGCAAGAACTTCGGGTCCATGAACATGGACGAGTTCCTCAGCAGCATATGGAGTGCAGAAGAGAATCAAGTTTTGAACAATTCCGTCTCTAACAACAACAACAACATGAACAACTTGTCTTTAGAAGCTTTGACAGAGAAAGGGGTGATAAGGAAGCAACCAAGCCTTCCTCGGCAAGGTTCTCTAACACTTCCTGCACCCTTGTGTAGGAAAACAGTGGACGAGGTTTGGTCTGAGATACACAAAGGACAACAATCTCAGCAACAACAACAGCAACAGCAAAACAATAACACTAACAACAATTGTGGCGGTGGTAGTAATAATAATAATGTGCAGAATACCGAATCTGCCCCTCGCCAACCTACCTTTGGAGAGATGACTTTGGAGGATTTCTTGGTTAAAGCTGGGGTAGTTAGGGAACAAGGTGGAATGGCTGCAATGCCTGCCATGCCTGCTCAAGCTTCAGCACATCAACATATGCAGCAGTATGGCATGTATGCAAATAACAACCCTACAATGGGGGCTTCTTTTGTCGGTAGGCCGGTAATGGGGATGGCGGGTGGCGTCGATGTCGGTGGCGGTGGTGGTGGGAATGTGGTTGCACCGCCTTACCAGGCTGTGCCTCAGGGTGGTGTTGGTGGTGCAATTGGGGATTCTTCTGGGTATGCTGGAAATGGAAAGAGGGATGTTGGGTATCCACCGGCGGCGGTGCCGCCACCGGGGGTTTGCTTTGGAGGGAGGGTGTTGAATGGTGGCGGTGGCTATGCGGCAGTGAGTAACATGGGAATGGTGGCGCCAGTGAGCCCGGTTTCACCGGAGGGGATTGGAACCGGCGAAAACTCTGGTGGTCAGTTCGGGATGGACATTAGTGTATTGAGAGGGAGAAAGAGGGTGTTGGATGGTCCTGTGGAGAAGGTGGTAGAGAGAAGGCAGAGGAGGATGATCAAGAACAGAGAATCAGCAGCCAGATCTAGAGCAAGAAAACAGGCATACACTGTTGAATTAGAAGCAGAATTAAACCAATTGAAAGAAGAGAACGGGCAACTTAAACTAGCTCTGGCTGATCTTGAGAGGAGAAGAAAGCAACAGTGTTTGGAGGAAGTGAACGGGAGAGTTCAAACCAACGCTCAGAAGGCCAAAAAGAAATTGAGATCATTGAGAAAGACCCTAAGTTGCCCTTTATGA 1485 0.4835 MALALVIDIRNGVSSSRATSTSENGAVVLNKKEKERNQEEHMVVPESEMNSQNEVESPLQLEQQQQQHNNKNDPFSSLGRQSSSIYSLTLDEFQHTLWESGKNFGSMNMDEFLSSIWSAEENQVLNNSVSNNNNNMNNLSLEALTEKGVIRKQPSLPRQGSLTLPAPLCRKTVDEVWSEIHKGQQSQQQQQQQQNNNTNNNCGGGSNNNNVQNTESAPRQPTFGEMTLEDFLVKAGVVREQGGMAAMPAMPAQASAHQHMQQYGMYANNNPTMGASFVGRPVMGMAGGVDVGGGGGGNVVAPPYQAVPQGGVGGAIGDSSGYAGNGKRDVGYPPAAVPPPGVCFGGRVLNGGGGYAAVSNMGMVAPVSPVSPEGIGTGENSGGQFGMDISVLRGRKRVLDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENGQLKLALADLERRRKQQCLEEVNGRVQTNAQKAKKKLRSLRKTLSCPL* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1927 494 CDD bZIP_plant_BZIP46 409 463 - -
Gso11g1927 494 PANTHER ABA RESPONSE ELEMENT-BINDING FACTOR 45 493 IPR029803 GO:0003700|GO:0005634|GO:0009737|GO:0045893
Gso11g1927 494 SUPERFAMILY Leucine zipper domain 409 453 IPR046347 GO:0003700|GO:0006355
Gso11g1927 494 Coils Coil 425 459 - -
Gso11g1927 494 Gene3D - 407 457 - -
Gso11g1927 494 MobiDBLite consensus disorder prediction 30 80 - -
Gso11g1927 494 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 407 459 IPR004827 GO:0003700|GO:0006355
Gso11g1927 494 MobiDBLite consensus disorder prediction 44 80 - -
Gso11g1927 494 Coils Coil 469 489 - -
Gso11g1927 494 SMART brlzneu 405 470 IPR004827 GO:0003700|GO:0006355
Gso11g1927 494 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 45 493 IPR043452 GO:0003700|GO:0045893
Gso11g1927 494 Pfam bZIP transcription factor 409 458 IPR004827 GO:0003700|GO:0006355
Gso11g1927 494 MobiDBLite consensus disorder prediction 179 221 - -
Gso11g1927 494 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 412 427 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1927 Gso-Chr11 34475623 34482475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1927 42 464 bZIP Transcription Factor Family AT2G36270 50.108 5.30e-107 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso11g1927 bZIP_1 1.1e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1927 K14432 - gmx:100790948 826.624