Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1908 ATGGTGAAACTCTTCAAGGTCGTAGCCTTAACTTTGTTGGTGTTATGGTCATGGTGGAGCTTTGAGGGTGCAGTAGGAGACCCTCAACTCTTTTTACTCACAAATGAGTGCAGCGGATTTACCACCGCAAATTTCGACTTGTCCACTTTCTTCCAAAATCTAAACGCAAGTTTCGCAGACCTGAGAGAGCAGGTGACCAACCAAAGCAAGCAATTTGCCATTGCTCAATCAACCAGCGGAACAAGTCCTGTCTATGCCATGTTTCAATGCATGAACTACCTCTCCATCGCTGACTGCGCTGCCTGCTTAGCAGCCGCCGACACCGAAATCCGCAACTGCTCCACCGGAACCACCGACGGTGCTCGTGTCGTTTATGACGGCTGCTTCCTCAGGTATGAGAACAATAACTTCTATGAAGACACCACTCTGCCTGGCAACAGTATGCGTTGTGGAAATCAGACAGCAGTTGAAACCACTACTTTTAGTACAACTGTACAGCAAGTGCTAATGGACCTGCGAATCGCAACACCTAAAATTAGTCGTTACTTTGCAACTACCAAGACACAAGTGGCTGGTATTGCAATCTATGCCGTTGCACAATGTGCTGAAACTTTTACACGAGACACTTGTTCGAGTTGTTTGTCAATTCAACAGAGTAACATACAAGGTTGTCTTCCCAATACAAATGGTAGGGCAATTGATCCTGCTGGATGCTTTATGAGATACTCACAGACACCCTTCTTTGCTGATAACCAAACCACTGATATCAGTCCCTTCTTAAACAAAGGAGGAAGTTCAAGCAAGAAGTGGGTCATTTTTGGTGGCGGTGTTGGAGGTGTAATCCTTGCTGTGATCCTTCTTTCATTATTTCGCTGGTATAGAAGATCCAACAGTCCCAAGAGAGTTCCTAGAGCTTACACATTGGGAGCAACAGAGTTGAAAGCTGCAACCAAGTACAAGTATAGTGACTTGAAAGCCGCAACAAAAAATTTTAGTGAGAGAAATAAGCTAGGAGAAGGAGGCTTTGGTGCTGTGTACAAGGGGACAATGAAAAATGGGAAAGTTGTTGCAGTAAAGTTACTTTCAGCAAAATCCAGCAAGATAGATGATGATTTTGAAAGAGAAGTAACGCTTATAAGTAATGTTCATCACAAAAATCTGGTTCAACTTCTTGGTTGTTGCGTTAAAGGCCAAGACAGAATACTTGTTTACGAATACATGGCAAACAACAGCCTTGAAAAATTCTTATTTGGTATAAGAAAAAATTCACTCAACTGGAGACAACGCTATGATATAATTTTGGGCACAGCAAGGGGATTGGCCTATCTACATGAGGAATTTCATGTTTCAATCATACATAGAGATATTAAGAGTGGCAATATCCTCTTGGATGAAGAGCTTCAGCCCAAAATTGCTGATTTTGGATTGGTGAAGTTGCTTCCAGGGGACCAATCTCATCTTAGTACAAGATTTGCTGGGACATTGGGATACACAGCACCAGAGTATGCACTCCATGGTCAATTATCAGAAAAGGCTGATACATACAGCTATGGAATTGTAGTCCTAGAAATCATAAGTGGTCGAAAGAGTACTGATGTGAATGCTGTTAATGATGATAGTGAGGATGATTACCTTCTTCGACAAGCATGGAAATTGTATGAGAGTGGCAAGCACTTGGAGTTAGTGGACAAAAGCTTAAACCCTTATAAGTATGATGCAGAAGAAGTGAAGAAAGTGATGGGCATTGCTTTGTTGTGTACTCAAGCATCGGCTGCAATGAGGCCAGCCATGTCTGAAGTAGTAATCCTACTCAGTAGCAATGACTTACTTGAACATATGAGACCATCGATGCCTATCTTTTTTGAGTCAAATTTAAAGCCCCGCAATGATATCTCTGCTTCAACTAGTTCCTCTATGACTAACACTACTACCTCAAATTCTATAATACCTGCTCGATGA 1959 0.4216 MVKLFKVVALTLLVLWSWWSFEGAVGDPQLFLLTNECSGFTTANFDLSTFFQNLNASFADLREQVTNQSKQFAIAQSTSGTSPVYAMFQCMNYLSIADCAACLAAADTEIRNCSTGTTDGARVVYDGCFLRYENNNFYEDTTLPGNSMRCGNQTAVETTTFSTTVQQVLMDLRIATPKISRYFATTKTQVAGIAIYAVAQCAETFTRDTCSSCLSIQQSNIQGCLPNTNGRAIDPAGCFMRYSQTPFFADNQTTDISPFLNKGGSSSKKWVIFGGGVGGVILAVILLSLFRWYRRSNSPKRVPRAYTLGATELKAATKYKYSDLKAATKNFSERNKLGEGGFGAVYKGTMKNGKVVAVKLLSAKSSKIDDDFEREVTLISNVHHKNLVQLLGCCVKGQDRILVYEYMANNSLEKFLFGIRKNSLNWRQRYDIILGTARGLAYLHEEFHVSIIHRDIKSGNILLDEELQPKIADFGLVKLLPGDQSHLSTRFAGTLGYTAPEYALHGQLSEKADTYSYGIVVLEIISGRKSTDVNAVNDDSEDDYLLRQAWKLYESGKHLELVDKSLNPYKYDAEEVKKVMGIALLCTQASAAMRPAMSEVVILLSSNDLLEHMRPSMPIFFESNLKPRNDISASTSSSMTNTTTSNSIIPAR* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1908 652 ProSiteProfiles Gnk2-homologous domain profile. 143 247 IPR002902 -
Gso11g1908 652 MobiDBLite consensus disorder prediction 631 652 - -
Gso11g1908 652 Gene3D Transferase(Phosphotransferase) domain 1 407 614 - -
Gso11g1908 652 Pfam Salt stress response/antifungal 150 244 IPR002902 -
Gso11g1908 652 Pfam Salt stress response/antifungal 44 134 IPR002902 -
Gso11g1908 652 Gene3D - 146 247 IPR038408 -
Gso11g1908 652 Gene3D - 32 137 IPR038408 -
Gso11g1908 652 Gene3D Phosphorylase Kinase; domain 1 297 406 - -
Gso11g1908 652 ProSiteProfiles Gnk2-homologous domain profile. 31 137 IPR002902 -
Gso11g1908 652 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 19 647 - -
Gso11g1908 652 CDD STKc_IRAK 337 601 - -
Gso11g1908 652 Pfam Protein tyrosine and serine/threonine kinase 334 601 IPR001245 GO:0004672|GO:0006468
Gso11g1908 652 SMART serkin_6 331 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1908 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Gso11g1908 652 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 19 647 - -
Gso11g1908 652 ProSiteProfiles Protein kinase domain profile. 331 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1908 652 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Gso11g1908 652 SUPERFAMILY Protein kinase-like (PK-like) 316 604 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1908 Gso-Chr11 33880033 33889075 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1908 10 644 Receptor kinase-like Gene Family AT1G70520 36.646 1.65e-122 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso11g1908 PK_Tyr_Ser-Thr 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1908 - - gmx:100792665 1254.97