Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1905 ATGATACTGCAGCAGATTATTAAGCTCCTGACCTTAACTTTGATATGGTGGAGCAGTATTAATGTTGAATGTGCAGTTGCGGGGACACGCGACACACGTGTGATAAACTCTGGATGCAGCACAATCAACGCTTCCAACCCGGGTAGTTTCTTTGGGAATGTCAATGAGACAATCTCAGAGCTGAGAGGAGAAATTAGGAACCAAAGCTTGCACTTTGGCACATCATTGAAATCCAAAGGAGATGTCAATACATATACTATGTTTCAATGCAGAAACTATCTCTCCAGAAATGACTGTCTTGCTTGCATCAACACTGCCTCCACCCAAATCCGGGATATATGCAAAAAAGCCAACGGCGCAAGACTCATCTACAATGACTGCTTCCTCAGGTATGAGAGTGAGAGGTTCTACCAACAGACCAACGAAATCGGTGGTGGGGTAACATGTGGGAACAAGAGCACAAATGCCACAGGTTTTAGAGAAGTTGGACAACAAGCACTACTGGACCTACAAAAAGCAACACCTAAAATTAAAGGTTTCTATGCAGCTACTAAGACACAGGTGGCTGGTGGTAGTGCAAATATTTATGCCATTGCACAGTGTGTTGAAACTGCTTCCCCACAGAAATGCCTGGATTGCATGCAAGTTGGATACAACAACTTACAAAGTTGCCTTCCCAGCACAGATGGTTCAGCATATGATGCTGGCTGTTTCATGAGATTCTCCACCACACCGTTCTTTGCTGATAATCAAACCATTAATATCAGACCCTATTTAAAAGAAGGAGGTTCAAGCAAGAAGTGGGCCATTATAGGTGGCGTCGTAGGAGGTGTTGTTCTCCTCCTTGTGTTGTTTGCCTGGAGATTGTTTACAAAACCAAAGAGAGCTCCCAAAGCTGACATATTGGGAGCAACTGAGTTGAAAGGTCCAGTTAGCTTCAAGTATAAAGATTTGAAAGCTGCAACAAAAAATTTCAGTGCTGATAATAAACTTGGAGAAGGAGGTTTTGGTGCTGTATACAAGGGTACTCTGAAAAATGGAAAAGTTGTTGCTGTGAAGAAACTAATGTTGGGGAAATCAAGCAAGATGGAGGATGATTTTGAAAGTGAAGTGAAGCTTATAAGTAATGTTCATCATCGGAATCTCGTTAGACTTCTTGGTTGTTGCAGCAGAGGCCCCGAGAGAATCCTAGTTTATGAATATATGGCAAATAGCAGCCTTGACAAATTCTTATTTGGTTCCAAAAAAGGTTCCCTCAATTGGAAACAACGTTATGATATAATTTTGGGCACAGCAAGGGGACTAGCATATCTACATGAGGAGTTCCATGTGTCCATCATTCATAGAGATATAAAGACCGGTAATATCCTTCTAGATGATTATCTCCAGCCCAAAATTGCAGATTTTGGGTTGGCAAGGCTTTTGCCAAGGGATCGTTCACATCTCAGCACAAAATTTGCTGGAACACTGGGATACACAGCACCTGAATATGCAATGCAAGGTCAATTATCAGAGAAAGCCGATACCTACAGTTATGGTATTGTGGTCCTAGAAATCTTAAGTGGTCAAAAGAGTACCAATGTAAAGGTTGATGACGAGGGTCGCGAGTACCTTCTTCAACGAGCATGGAAACTGTATGAGAGAGGCATGCAGTTGGAGCTTGTGGACAAGGACATAGACCCCAATGAATATGATGCAGAAGAAGCGAAGAAAATCATTGAAATTGCTTTATTATGCACTCAAGCATCAGCTGCAGCCAGGCCAACAATGTCTGAATTAATAGTTCTACTCAAAAGCAAGAGCTTAGTGGAGCACCTTCGACCAACTATGCCGGTGTTTGTTGAAACGAATATGATGAATCAGGAAGGTGGCAGCTCTCCTGGTACATCTAATGCTACTATCTCCATTTCCGTTCTATCGGCCAGATGA 1929 0.4241 MILQQIIKLLTLTLIWWSSINVECAVAGTRDTRVINSGCSTINASNPGSFFGNVNETISELRGEIRNQSLHFGTSLKSKGDVNTYTMFQCRNYLSRNDCLACINTASTQIRDICKKANGARLIYNDCFLRYESERFYQQTNEIGGGVTCGNKSTNATGFREVGQQALLDLQKATPKIKGFYAATKTQVAGGSANIYAIAQCVETASPQKCLDCMQVGYNNLQSCLPSTDGSAYDAGCFMRFSTTPFFADNQTINIRPYLKEGGSSKKWAIIGGVVGGVVLLLVLFAWRLFTKPKRAPKADILGATELKGPVSFKYKDLKAATKNFSADNKLGEGGFGAVYKGTLKNGKVVAVKKLMLGKSSKMEDDFESEVKLISNVHHRNLVRLLGCCSRGPERILVYEYMANSSLDKFLFGSKKGSLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKTGNILLDDYLQPKIADFGLARLLPRDRSHLSTKFAGTLGYTAPEYAMQGQLSEKADTYSYGIVVLEILSGQKSTNVKVDDEGREYLLQRAWKLYERGMQLELVDKDIDPNEYDAEEAKKIIEIALLCTQASAAARPTMSELIVLLKSKSLVEHLRPTMPVFVETNMMNQEGGSSPGTSNATISISVLSAR* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1905 642 Pfam Protein tyrosine and serine/threonine kinase 327 595 IPR001245 GO:0004672|GO:0006468
Gso11g1905 642 Gene3D Phosphorylase Kinase; domain 1 299 401 - -
Gso11g1905 642 ProSiteProfiles Protein kinase domain profile. 325 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1905 642 Gene3D Transferase(Phosphotransferase) domain 1 402 608 - -
Gso11g1905 642 ProSiteProfiles Gnk2-homologous domain profile. 32 136 IPR002902 -
Gso11g1905 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Gso11g1905 642 Gene3D Single helix bin 259 291 - -
Gso11g1905 642 Gene3D - 147 246 IPR038408 -
Gso11g1905 642 Gene3D - 31 136 IPR038408 -
Gso11g1905 642 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 14 638 - -
Gso11g1905 642 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 14 638 - -
Gso11g1905 642 CDD STKc_IRAK 331 598 - -
Gso11g1905 642 SUPERFAMILY Protein kinase-like (PK-like) 308 597 IPR011009 -
Gso11g1905 642 ProSiteProfiles Gnk2-homologous domain profile. 141 246 IPR002902 -
Gso11g1905 642 SMART serkin_6 325 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1905 642 Pfam Salt stress response/antifungal 42 133 IPR002902 -
Gso11g1905 642 Pfam Salt stress response/antifungal 149 243 IPR002902 -
Gso11g1905 642 ProSitePatterns Protein kinases ATP-binding region signature. 331 354 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1905 Gso-Chr11 33804902 33808691 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1905 26 642 Receptor kinase-like Gene Family AT1G70520 36.407 1.45e-127 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso11g1905 Pkinase 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1905 - - gmx:100305452 1251.5