Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1901 ATGCAACTGAAGCTCGTAGCCTTAACCTTGTCGATATTTTGGCCATGGTGGAGCTTTGAGGGTGCTGTAGGAGACCCTCAACTCTTTTTCCTCACATTTGAATGCAGCACAGTCTCGGCACGCGACTTGTCCAACTTGTATCAAAATCGAAACGCAAGTTTCGCTGCCCTGAGATCGCAGGTTAGCAACCAAAGCAAGCACTTTGCCGCGGCTCAATCAACCAGTGGATCAGACCCTGTCTATGCAACGTTCCAATGCAGGAACTACCTTTCCAACACAGACTGCACCACCTGCTTTGACGCGGCTGCTGCCAATATCCGCAACTGCTCCACCGGAAATACTGCTCATCTTGTTTATGACGGCTGTATCCTCAGGTACTTGAACAGTGTGTTCTTGGACAACAGTATCATTTTTAGCAGCCACACATTTTGTGGAAATCAGACTGCCGATGAAAGCACTGCTTTTGGAACAGTTGGACGACAAGTGCTGATGGATCTACAAATAGCAATACCCAAAATTAGTGGCTACTTTGCAGCTACCAAGACACAAGTGGCTGGCGGTGCAATGTATGCCTTTGCACAATGTGCTGAAACTCTCACACGCGACACTTGTTCGAATTGTTTGTCAAATCAGCTGAGCAACATACAAGGTTGTCTTCCCAATACAAATGGTAGGGCAATTGACCCTGCTGGATGCTTTATGAGATACTCGGAGACACCCTACTTTGCTGATAACCAAACCACTGATATCAGTCTCTTCTTAAAACAAGGACCAGGAGGTTCAATGAGTAAGTGGGTCACTATTGGTGGTGGTCTTGCAGGTGCACTCCTTGTTGTGATCCTTCTTTCATTATTTCCTTGGTATAGAAGATCCCAAAGTCCAAAGAGAGTTCCTAGAGCTTACACATTGGGAGCAACTGAGTTGAAAGCTGCAACAAAGTACAAGTATAGTGACTTGAAAGCTGCAACAAAAAATTTTAGTGAGAAAAATAAGCTAGGAGAAGGAGGCTTTGGTGCTGTATACAAGGGGACAATGAAAAATGGGAAAGTTGTTGCAGTAAAAAAGTTACTTTCGGGGAAATCCAGCAAGATCGATGACGAATTTGATAGTGAAGTAACACTTATAAGTAATGTTCATCACAAAAATCTGGTTCGACTTCTTGGTTGTTGTAGTAAAGGCCAAGACAGAATTCTTGTTTACGAATACATGGCAAACAACAGCCTTGACAAATTCTTATTTGGTAAAAAAAAAGGTTCACTCAACTGGAGACAACGGTATGATATAATTTTGGGCACAGCTAGGGGATTGGCCTATCTACATGAGGAATTTCATGTTTCTGTCATACATAGAGATATCAAGAGTGGAAATATTCTTTTGGATGAAGAACTTCAGCCTAAAATTGCAGATTTTGGATTGGCAAAGCTGCTTCCAAGCGACCAATCTCATCTTAGCACAAGATTTGCTGGAACATTGGGATACACAGCACCTGAGTATGCACTCCATGGTCAATTATCAAAAAAGGCTGATACATACAGCTATGGAATTGTAGTTCTAGAAATCATAAGTGGTCGAAAGAGTACTGATGTGAATGTTGTTAATGATGATAATGAGGATGATTACCTTCTTCGACAAGCATGGAAATTGTATGAGAGTGGCAAGCACTTGGAGTTAGTGGATAAAAGCTTAAACCTTAATAACTATGATTCAGAAGAAGTGAAGAAAGTGATAGGCATTGCTTTGTTGTGCACTCAAGCATCGTCTGCAATGCGGCCAGCCATGTCTGAAGTAGTAGTCCAACTCAATAGCAATGACTTACTTGAGCATATGAGACCTTCGATGCCTATCTTTTTTGAGTCAAATTTAAGGGCCCCTTAA 1875 0.4219 MQLKLVALTLSIFWPWWSFEGAVGDPQLFFLTFECSTVSARDLSNLYQNRNASFAALRSQVSNQSKHFAAAQSTSGSDPVYATFQCRNYLSNTDCTTCFDAAAANIRNCSTGNTAHLVYDGCILRYLNSVFLDNSIIFSSHTFCGNQTADESTAFGTVGRQVLMDLQIAIPKISGYFAATKTQVAGGAMYAFAQCAETLTRDTCSNCLSNQLSNIQGCLPNTNGRAIDPAGCFMRYSETPYFADNQTTDISLFLKQGPGGSMSKWVTIGGGLAGALLVVILLSLFPWYRRSQSPKRVPRAYTLGATELKAATKYKYSDLKAATKNFSEKNKLGEGGFGAVYKGTMKNGKVVAVKKLLSGKSSKIDDEFDSEVTLISNVHHKNLVRLLGCCSKGQDRILVYEYMANNSLDKFLFGKKKGSLNWRQRYDIILGTARGLAYLHEEFHVSVIHRDIKSGNILLDEELQPKIADFGLAKLLPSDQSHLSTRFAGTLGYTAPEYALHGQLSKKADTYSYGIVVLEIISGRKSTDVNVVNDDNEDDYLLRQAWKLYESGKHLELVDKSLNLNNYDSEEVKKVIGIALLCTQASSAMRPAMSEVVVQLNSNDLLEHMRPSMPIFFESNLRAP* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1901 624 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 18 611 - -
Gso11g1901 624 ProSiteProfiles Protein kinase domain profile. 326 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1901 624 Gene3D Transferase(Phosphotransferase) domain 1 403 610 - -
Gso11g1901 624 CDD STKc_IRAK 332 601 - -
Gso11g1901 624 Pfam Salt stress response/antifungal 43 128 IPR002902 -
Gso11g1901 624 Pfam Salt stress response/antifungal 147 238 IPR002902 -
Gso11g1901 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Gso11g1901 624 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 18 611 - -
Gso11g1901 624 Gene3D - 138 241 IPR038408 -
Gso11g1901 624 Gene3D - 29 131 IPR038408 -
Gso11g1901 624 ProSiteProfiles Gnk2-homologous domain profile. 137 241 IPR002902 -
Gso11g1901 624 Pfam Protein kinase domain 326 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1901 624 SUPERFAMILY Protein kinase-like (PK-like) 311 600 IPR011009 -
Gso11g1901 624 SMART serkin_6 326 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1901 624 ProSitePatterns Protein kinases ATP-binding region signature. 332 355 IPR017441 GO:0005524
Gso11g1901 624 Gene3D Phosphorylase Kinase; domain 1 292 402 - -
Gso11g1901 624 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1901 Gso-Chr11 33577519 33581369 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1901 18 621 Receptor kinase-like Gene Family AT1G70520 36.116 9.33e-119 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso11g1901 Pkinase 6.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1901 - - gmx:100786836 1220.68