Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1897 ATGTTTGAGAATCACAAGAATATGGTGCAACTCAAGGTCGTAGCCTCAACCTTGTTGGTGTTGTGGTCATGGTGGAGCTTTGAGGGTGCAGTTGGAGACCCTCAACTCTTTTTACTCAAATGGGAGTGCAGCGTAGTCGCAGTACACGACTTGCTCAACTTCAACCAAAATCTAAACGCAAGTTTGGTCGACCTTAGAGCACAAGTGAGCAACCAAAGAAAACACTTTGCCACGGCTCAATCAACCAGCGGAGCAGACCCAGTCCATGCCATGTTCCAATGCAGGAACTACCTCTCCATCACTGACTGCACCACCTGCTTTGCCACCGCTGCCACCAGAATTCACAACTGCTCCACTGGAAACGGTGCCCATGTCGTGTATGACGGCTGCATCCTCAGGTACGAGAACAATGAATTCTTGGATCACAGTCTCAGTTCTACCCTCCACACACTTTGCGGAAATGAGACAGCAGATGAAAGCACTGCTTTTGGTACAGTTGGACGGCAAGCTCTGATGGATCTACAAATAGCAACACCAAAAATTGGTGGCTACTTTGCAGCTACCAAGACACAAGTGGCTGGTGGTGCGATCTATGCCTTTGCTCAATGTGTTGAAACTCTCACGCAAGAAACCTGTTCGGACTGTTTGTCAATTGCACAGAGTGGCATACAAGATTGTCTTCCAAAGACAAATGGTCGGGGAGTCAATCCTCCAGTGTGCTTTATGAGATACTCGGAGAAACCTTTCTTTGCAGATAACCAAACCATTGATATCAGTCTCTTCTTAAAACAAGGAGGAGGAGGTTCAATCAAGAAGTGGCTTGTTATTGGTGGTGGTGTTTCAAGTGCACTCCTTGTTCTGATCCTTATTTCATTATTTCGGTGGCATAGAAGATCCCAAAGTCCCACTAAAGTTCCTAGAAGTACCATAATGGGAGCGTCCAAGTTGAAAGGGGCAACCAAGTTCAAGTATAGTGACTTGAAAGCTGCAACAAAAAATTTTAGTGAGAAAAATAAACTTGGAGAAGGAGGCTTTGGTGCTGTATACAAGGGAACTATGAAAAACGGGAAAGTTGTTGCAGTCAAAAAATTAATTTCAGGAAATTCCAGCAACATAGATGATGAATTTGAAAGTGAAGTAACGCTTATAAGTAATGTTCATCACAGAAATCTTGTTCGGCTTCTTGGTTGTTGCAATAAAGGCCAAGAAAGAATCCTTGTTTACGAATACATGGCAAACGCCAGCCTAGACAAATTCTTATTTGGAAAAAGAAAAGGCTCCCTCAACTGGAAACAACGGTATGATATAATTTTGGGCACAGCAAGGGGATTGAATTATCTACATGAGGAATTTCATGTTTCTATCATACATAGAGATATTAAGAGTGAAAATATCCTATTGGATGAACAACTTCAACCCAAAGTTTCTGATTTTGGGCTGGTGAAGCTCCTACCAGAAGACCAATCTCATCTTACCACAAGATTTGCTGGGACATTGGGATACACAGCACCTGAGTATGCACTCCATGGTCAATTATCAGAAAAGGCTGATATATACAGCTATGGAATTGTAGTCCTTGAGATTATAAGTGGTCAAAAGAGTATTGATTCCAAGGTCATTGTTGTTGATGATGGTGAGGATGAATACCTTCTTCGACAAGCTTGGAAGTTGTATGTGAGAGGCATGCACTTGGAGTTAGTGGACAAAAGCTTAGACCCTAATAGTTATGATGCAGAAGAAGTGAAGAAAATCATAGGCATTGCTTTGATGTGCACTCAATCATCAGCTGCAATGAGGCCATCCATGTCTGAAGTAGTAGTCCTACTCAGTGGCAATCACTTACTTGAGCATATGAGACCTTCTATGCCTCTCTTTATTCAGTTGACGAATTTAAGGCCCCACAGAGATATCTCTGCTTCAACTGGTTCCTCTACGACTAATGCTACTATCTCAAATTCTATAGTACCCACTCAATGA 1977 0.4254 MFENHKNMVQLKVVASTLLVLWSWWSFEGAVGDPQLFLLKWECSVVAVHDLLNFNQNLNASLVDLRAQVSNQRKHFATAQSTSGADPVHAMFQCRNYLSITDCTTCFATAATRIHNCSTGNGAHVVYDGCILRYENNEFLDHSLSSTLHTLCGNETADESTAFGTVGRQALMDLQIATPKIGGYFAATKTQVAGGAIYAFAQCVETLTQETCSDCLSIAQSGIQDCLPKTNGRGVNPPVCFMRYSEKPFFADNQTIDISLFLKQGGGGSIKKWLVIGGGVSSALLVLILISLFRWHRRSQSPTKVPRSTIMGASKLKGATKFKYSDLKAATKNFSEKNKLGEGGFGAVYKGTMKNGKVVAVKKLISGNSSNIDDEFESEVTLISNVHHRNLVRLLGCCNKGQERILVYEYMANASLDKFLFGKRKGSLNWKQRYDIILGTARGLNYLHEEFHVSIIHRDIKSENILLDEQLQPKVSDFGLVKLLPEDQSHLTTRFAGTLGYTAPEYALHGQLSEKADIYSYGIVVLEIISGQKSIDSKVIVVDDGEDEYLLRQAWKLYVRGMHLELVDKSLDPNSYDAEEVKKIIGIALMCTQSSAAMRPSMSEVVVLLSGNHLLEHMRPSMPLFIQLTNLRPHRDISASTGSSTTNATISNSIVPTQ* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1897 658 Gene3D - 38 139 IPR038408 -
Gso11g1897 658 Gene3D - 145 249 IPR038408 -
Gso11g1897 658 Gene3D Transferase(Phosphotransferase) domain 1 411 619 - -
Gso11g1897 658 ProSitePatterns Protein kinases ATP-binding region signature. 340 363 IPR017441 GO:0005524
Gso11g1897 658 CDD STKc_IRAK 340 606 - -
Gso11g1897 658 Coils Coil 55 75 - -
Gso11g1897 658 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 25 651 - -
Gso11g1897 658 Gene3D Phosphorylase Kinase; domain 1 296 410 - -
Gso11g1897 658 ProSiteProfiles Gnk2-homologous domain profile. 145 249 IPR002902 -
Gso11g1897 658 ProSiteProfiles Gnk2-homologous domain profile. 36 139 IPR002902 -
Gso11g1897 658 MobiDBLite consensus disorder prediction 637 658 - -
Gso11g1897 658 SUPERFAMILY Protein kinase-like (PK-like) 320 642 IPR011009 -
Gso11g1897 658 ProSiteProfiles Protein kinase domain profile. 334 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1897 658 SMART serkin_6 334 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1897 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Gso11g1897 658 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 25 651 - -
Gso11g1897 658 Pfam Salt stress response/antifungal 156 246 IPR002902 -
Gso11g1897 658 Pfam Salt stress response/antifungal 53 136 IPR002902 -
Gso11g1897 658 Pfam Protein kinase domain 334 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1897 Gso-Chr11 33451584 33462615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1897 19 653 Receptor kinase-like Gene Family AT1G70520 36.055 1.18e-123 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso11g1897 Pkinase 1.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1897 - - gmx:100784716 1273.84