Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1894 ATGCTGCAACTTAAGCTTCTTGCCCTAACTTTGATATGGTGGAGCTGTATTAACTTGGATTATGCAGCTGCAGCCACACGTGACACACGTCTAATTAATTCTGGGTGTAGCCCATTCAATGCTTCCAACACGCGTAGCTTCTTTGCAAATGTCAATGATTCGATCTCAGAGCTGAGAGGAGAAATCAGCAACCAAAGCCTGCACTTTGGCACATTCAAGAAATCCAGGGGAGATGTCAATACATATACTATGTTTCAATGCAGAAACTATCTCTCCAAAAATGACTGTCTTGCTTGCTTCAATAATGCCTCCATCCAAATCCGGGATATATGCAAAATTGCCAACGGCGCCAGAGTCATCTACAATGACTGCTTCCTAAGGTATGAGAGCGAGAGGTTCTACCAACAGACCAATGAACTTGGCGGTGGGGTAACATGTGGGAACATCAGTTCAAATGCCACTAATTTAAAAGTAGTTGGACAACAAGTGCTAAATGATCTCCAACTAGCAACACCCAAAACTAAAGGTTTTTATGCAGCTACTAAGACAAAGGTGGATGGTGATAGAGCAATTTATGCCATTGCACAGTGTGTTGAATCTGCCACACAGACTAAATGTCTGGATTGCATGCAAGTCGGATTCAATAACTTACAAAGTTGCCTTCCCAACACAGATGGTACAGCATATGATGCTGGCTGTTTCATGAGATACTCCATGACACCCTTGTTTGCTGATAATCAAACCATTGACATCAGACCCTATTTAAAAGAAGGAGGTTCAAGCAAGAAGTGGGCTATAATAGGTGGAGTTGTTGGAGGTGTTGTTCTCCTCCTATTGTTGTTTGCCCTACAATGGTCTAGAAAAACAAAGAAAGTTCACAGGGGTGACATATTGGGAGCAACTGAGTTGAAAGGTCCAGTTAACTACAAGTTTAAAGATTTGAAAGTTGCAACAAAAAATTTCAGTGCTGAAAATAAACTTGGAGAAGGAGGTTTTGGCGCTGTATATAAGGGTACTTTGAAGAATGGAAAAATTGTTGCCATCAAGAAACTAGTGTTGGGGAAATCAAGCAAGATGGAGGATGATTTTGAAAGTGAAGTGAAACTTATAAGTAATGTTCATCATCGGAATCTCGTTAGACTTCTTGGTTGTTGTACCAAAGGCCAAGAGAGAATCCTGGTTTACGAATACATGGCAAATAGTAGTCTTGACAAATTCTTGTTTGGTGACAAAGGTGTCCTCAATTGGAAACAACGGTATGATATAATTTTAGGCACAGCAAGAGGACTAGCATATCTACATGAGGAATTTCATGTGTCCATTATACATAGAGATATAAAGACTGCTAATATCCTCTTAGATGATGATCTTCAGCCCAAAATTGCTGATTTTGGGTTGGCTAGGCTTCTTCCACGGGATCGTTCCCATCTTAGTACAAAATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATGCAAGGTCAATTATCAGAGAAGGCTGATACCTACAGCTATGGAATTGTAGTCCTAGAAATCATAAGTGGTCAAAAGAGTACTGATGTGAAGATTGATGAGGAGGGTCGTGAGTACCTTCTTCAACGAGCATGGAAACTGTATGAGAGAGGCATGCAGTTATCACTTGTCGACAAGGAAATAGACCCTAATGAATATGATGCAGAAGAAATGAAAAAAATCATAGAAATTGCATTATTATGCACTCAAGCAACAGCTGCAACGAGGCCAACAATGTCTGAATTAATAGTGCTGCTCAAAAGCAAGAGCTTAGTGGAGCACCTGCGACCAACTATGCCTGTGTTTGTTGAAACGAATATGATGAATCGGGAAGGCATGTCTGCTGGTGGTTCATCTAATGCTACTGCCTCCATTTCTGTTTTATCAGCTCGATGA 1914 0.408 MLQLKLLALTLIWWSCINLDYAAAATRDTRLINSGCSPFNASNTRSFFANVNDSISELRGEISNQSLHFGTFKKSRGDVNTYTMFQCRNYLSKNDCLACFNNASIQIRDICKIANGARVIYNDCFLRYESERFYQQTNELGGGVTCGNISSNATNLKVVGQQVLNDLQLATPKTKGFYAATKTKVDGDRAIYAIAQCVESATQTKCLDCMQVGFNNLQSCLPNTDGTAYDAGCFMRYSMTPLFADNQTIDIRPYLKEGGSSKKWAIIGGVVGGVVLLLLLFALQWSRKTKKVHRGDILGATELKGPVNYKFKDLKVATKNFSAENKLGEGGFGAVYKGTLKNGKIVAIKKLVLGKSSKMEDDFESEVKLISNVHHRNLVRLLGCCTKGQERILVYEYMANSSLDKFLFGDKGVLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKTANILLDDDLQPKIADFGLARLLPRDRSHLSTKFAGTLGYTAPEYAMQGQLSEKADTYSYGIVVLEIISGQKSTDVKIDEEGREYLLQRAWKLYERGMQLSLVDKEIDPNEYDAEEMKKIIEIALLCTQATAATRPTMSELIVLLKSKSLVEHLRPTMPVFVETNMMNREGMSAGGSSNATASISVLSAR* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1894 637 Gene3D Transferase(Phosphotransferase) domain 1 398 603 - -
Gso11g1894 637 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 12 631 - -
Gso11g1894 637 SUPERFAMILY Protein kinase-like (PK-like) 309 614 IPR011009 -
Gso11g1894 637 CDD STKc_IRAK 327 593 - -
Gso11g1894 637 Gene3D Phosphorylase Kinase; domain 1 284 397 - -
Gso11g1894 637 SMART serkin_6 321 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1894 637 Pfam Salt stress response/antifungal 161 238 IPR002902 -
Gso11g1894 637 Pfam Salt stress response/antifungal 40 130 IPR002902 -
Gso11g1894 637 ProSiteProfiles Gnk2-homologous domain profile. 137 242 IPR002902 -
Gso11g1894 637 ProSiteProfiles Protein kinase domain profile. 321 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1894 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Gso11g1894 637 Pfam Protein kinase domain 322 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1894 637 Gene3D - 28 133 IPR038408 -
Gso11g1894 637 Gene3D - 144 241 IPR038408 -
Gso11g1894 637 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Gso11g1894 637 ProSitePatterns Protein kinases ATP-binding region signature. 327 350 IPR017441 GO:0005524
Gso11g1894 637 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 12 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1894 Gso-Chr11 33295463 33300384 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1894 30 637 Receptor kinase-like Gene Family AT1G70520 36.000 1.51e-120 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso11g1894 Pkinase 2.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1894 - - gmx:112997608 1082.01