Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1889 ATGGATCTACAAATAGCAACACCCAAAATTAGTAGCTACTTTACAGCTACCAAGACACAAGTGGCTGGTGTTACAATCTATGCCATTGCACAATGTGCTGAAACTCTCACACAAGACACTTGTTCGAATTGTTTGTCAATTGCACAGAGCGGCATACAAGATTGTCTTCCAGATACAAATGGTAGGGGAGTCAATCCTCCTGTGTGCTTTATGAGATACTCGGAGACACCTTTCTTTGCTGATAACCAAACCACTTTTATCAGCCCCTTCTTAAAACAAGGTACCATAATGGGAGCAACTGAGTTGAAAGGTCCAATCAAGTACAAGTATAATGACTTGAAAGCTGCAACAAAAAAATTTAGTGAGAAAAATAAATTAGGCGAAGGAGGCTTTGGCGCTGTATACAAGGGGGCTATGAAAAATGGGAAAGATGTAGCAGTCAAAAAATTAAATATTCCTGGAAATTCCAGCAAGATAGATGACTTGTTTGAAAGGGAAGTAATGCTTATAAGTAATGTTCATCACAAAAATCTTGTTCAGCTTCTTGGTTATTGCAGTAAAGGCCAACAAAGAATCCTTGTTTACGAATACATGGCAAACACTAGCCTAGACAAATTCGTATTTGGAAGAAGAAAAGGTTCCCTCAACTGGAAACAACGGTATGATATAATTTTGGGCATTGCAAGGGGATTGACTTATTTACATGAGGAATTTCATGTTTGTATCATACATAGAGATATTAAGAGTAGCAATATCCTCTTGGATGAACAACTTCAACCCAAAATTTCTGACTTTGGGTTGGTGAAACTCTTACCTGGGGACCAATCTCATCTTAGCACAAGAGTTGTAGGAACATTGTAA 861 0.381 MDLQIATPKISSYFTATKTQVAGVTIYAIAQCAETLTQDTCSNCLSIAQSGIQDCLPDTNGRGVNPPVCFMRYSETPFFADNQTTFISPFLKQGTIMGATELKGPIKYKYNDLKAATKKFSEKNKLGEGGFGAVYKGAMKNGKDVAVKKLNIPGNSSKIDDLFEREVMLISNVHHKNLVQLLGYCSKGQQRILVYEYMANTSLDKFVFGRRKGSLNWKQRYDIILGIARGLTYLHEEFHVCIIHRDIKSSNILLDEQLQPKISDFGLVKLLPGDQSHLSTRVVGTL* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1889 286 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1 89 - -
Gso11g1889 286 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 92 285 - -
Gso11g1889 286 Gene3D - 2 78 IPR038408 -
Gso11g1889 286 ProSiteProfiles Protein kinase domain profile. 120 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1889 286 SUPERFAMILY Protein kinase-like (PK-like) 103 285 IPR011009 -
Gso11g1889 286 Pfam Protein kinase domain 120 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1889 286 Gene3D Phosphorylase Kinase; domain 1 90 197 - -
Gso11g1889 286 ProSiteProfiles Gnk2-homologous domain profile. 1 78 IPR002902 -
Gso11g1889 286 SMART serkin_6 120 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1889 286 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Gso11g1889 286 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 89 - -
Gso11g1889 286 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 92 285 - -
Gso11g1889 286 Gene3D Transferase(Phosphotransferase) domain 1 198 286 - -
Gso11g1889 286 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Gso11g1889 286 Pfam Salt stress response/antifungal 14 75 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1889 Gso-Chr11 33256905 33258783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1889 24 286 Receptor kinase-like Gene Family AT1G70530 41.118 3.14e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso11g1889 Pkinase 1.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1889 - - gsj:114373212 578.17