Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1887 ATGGTGCAACTAAAGCTCATAGCCTTAACCTTGTCGGTGTTGTGGTCATGGTGGAGTTTTGAGGGTGCAGTTGGAGACCCTCAACTCTTTCTACTCAAATGGGAGTGCGGCGTAGTCTCGGTTCATGACTTGTCCAACTTCAACCAAAATCGTAACGCAAGTTTGGCAGACCTGAGATTGCAGCTAGTGAGCAACCAAAGCAAGCACTTTCTCACGGCTCAATCAACCACTGGAGCAGACCCTGTCTATGCTATGTTCCAATGCCGGAACTACCTCTCCAACACTGACTGCACCGCCTGCTTAGCCGCCACCACCACCAATATCCGCAACTGCTCCACGGGAAATACTGCCCGTATCGTTTATGACGGCTGTATCCTTAGGTACGAGAACAATGACTTCTTCGACCAATATCGCATTACTGGCAGCCACTCACTTTGTGGAGATCAAGCTGCAGATGAAAGCACTGGTTTTGGTACCATTGGACAGCAAGTGCTGATAGATCTGCAAATAGCAACACCCAAAATTAGTGGCTACTTTGCGGCTACCAAGACACATATTGCTGGCGGTGCAATCTATGCCGTTGCACAATGTGCTGAAACTCTAACACAACACAACTGTTTGGATTGTTTGTCAATTCAACAGATTGGTGTACAAGGTTGTCTTCCCAATACAAATGCCAGGGTAGTCGATCCTTCTGGGTGCTTTATGAGATACTCGGAGATACCCTTCTTTGCTGATAACCAAACCATTGATATCAGCCCCTTCTTAAAACAAGGTTCAAGTAAGAAGTGGTTCATTATTTGTGGTGTTGTTGGGAGTGCAGTCCTAGTTGTGATCCTTCTTTTATTATTTCCCTGGCATAGAAGATCCCAAAGTCCCAAGAGAGTTACTAGAGGTACCATAATGGGAGCAACTGAATTGAAAGGTCCAACCAAGTACAAGTATAGTGACTTGAAAGCTGCAACAAAAAATTTCAGTGAGAAAAATAAATTAGGAGAAGGAGGCTTTGGTGCTGTATACAAGGGTACCATGAAAAATGGGAAAGTCGTTGCAGTCAAAATATTAATTTCAGGAAATTCCAACCAGATAGATGATGAATTTGAAAGTGAAGTAACAATTATAAGTAATGTTCATCATAGAAATCTTGTTCGGCTTCTTGGTTGTTGCAGTAAAGGCGAAGAAAGAATCCTTGTTTACCAATACATGGCAAACACAAGCCTAGACAAATTCTTATTTGGAAAAAGAAAAGGTTCCCTCCACTGGAAAAACCGCTACGATATAATTTTGGGTACAGCAAGGGGATTGACTTATCTACATGAGGAATTTCATGTTTCTATCATTCATAGAGATATTAAGAGTGGCAATATCCTCTTGGATGAACAACTTCAGCCAAAAATTTCTGACTTTGGGTTGGTGAAACTCCTACCAGGGGACCAATCTCATCTTCGCACAAGAGTTGCAGGAACATTGGGATACACAGCACCTGAGTATGTAATCCATGGTCAATTATCAGAAAAGGCTGATACATATAGCTATGGAATTGTAGTATTAGAAATCATAAGTGGTCAAAAGAGTACTGATGTGAAATTTGTTGATGATGATGGTGATGAAGAATATCTTCTTCGACGAGCTTGGAGGTTGTATGAGAGTGGCATGCTCTTGGAATTAGTGGACAAAAGCTTAGACCCTAATGACTATGATGCAGAAGAAGTGAAGAAAGTCATAGCCATTGCATTGTTGTGCACTCAAGCATCGCCTGCAAAGAGGCCAGCCATGTCTGAAGTAGTAGTTCTACTCAGTTGCAATGAAATACTTGAACATATGAGACCTTCAATGCCTATCTTTTTGAAGTCGAATTTAAGTCCTCACGAAGACATCTCTGCTGATGATTAA 1893 0.42 MVQLKLIALTLSVLWSWWSFEGAVGDPQLFLLKWECGVVSVHDLSNFNQNRNASLADLRLQLVSNQSKHFLTAQSTTGADPVYAMFQCRNYLSNTDCTACLAATTTNIRNCSTGNTARIVYDGCILRYENNDFFDQYRITGSHSLCGDQAADESTGFGTIGQQVLIDLQIATPKISGYFAATKTHIAGGAIYAVAQCAETLTQHNCLDCLSIQQIGVQGCLPNTNARVVDPSGCFMRYSEIPFFADNQTIDISPFLKQGSSKKWFIICGVVGSAVLVVILLLLFPWHRRSQSPKRVTRGTIMGATELKGPTKYKYSDLKAATKNFSEKNKLGEGGFGAVYKGTMKNGKVVAVKILISGNSNQIDDEFESEVTIISNVHHRNLVRLLGCCSKGEERILVYQYMANTSLDKFLFGKRKGSLHWKNRYDIILGTARGLTYLHEEFHVSIIHRDIKSGNILLDEQLQPKISDFGLVKLLPGDQSHLRTRVAGTLGYTAPEYVIHGQLSEKADTYSYGIVVLEIISGQKSTDVKFVDDDGDEEYLLRRAWRLYESGMLLELVDKSLDPNDYDAEEVKKVIAIALLCTQASPAKRPAMSEVVVLLSCNEILEHMRPSMPIFLKSNLSPHEDISADD* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1887 630 Pfam Salt stress response/antifungal 154 239 IPR002902 -
Gso11g1887 630 Pfam Salt stress response/antifungal 43 130 IPR002902 -
Gso11g1887 630 CDD STKc_IRAK 331 596 - -
Gso11g1887 630 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 18 612 - -
Gso11g1887 630 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Gso11g1887 630 ProSiteProfiles Gnk2-homologous domain profile. 139 243 IPR002902 -
Gso11g1887 630 SMART serkin_6 325 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1887 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Gso11g1887 630 ProSiteProfiles Protein kinase domain profile. 325 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1887 630 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 18 612 - -
Gso11g1887 630 SUPERFAMILY Protein kinase-like (PK-like) 307 599 IPR011009 -
Gso11g1887 630 Gene3D Phosphorylase Kinase; domain 1 289 401 - -
Gso11g1887 630 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Gso11g1887 630 Pfam Protein kinase domain 325 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1887 630 Gene3D - 30 133 IPR038408 -
Gso11g1887 630 Gene3D - 140 243 IPR038408 -
Gso11g1887 630 Gene3D Transferase(Phosphotransferase) domain 1 402 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1887 Gso-Chr11 33220795 33227927 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1887 19 630 Receptor kinase-like Gene Family AT1G70520 37.640 3.12e-121 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso11g1887 Pkinase 1.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1887 - - gmx:100775608 1256.51