Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1884 ATGGTGCAACTCAAGCTCGTGGCATTAACCTTGTTGGTGTTGTGGTCATGGTGGAACTTTGAGGGTGCAGTTGGAGACCCTCAAACCCTTTTACTCAAATTTGAGTGCAGTGTAGTCTCGGTACACGACTCGGCCAACTTCTTCCAAAATCTAAACGCTAGTTTGGCAAACCTGAAATCGCAGCTGGTGAGCAACCAAAGCAAGCACTTTGTCACAGCTCAATCAACCACCGGAACGGATCCTGTCTATGCAATGTTCCAATGCAGGAACTACCTCTCCAACACTGACTGCGTCACCTGTTTCGCTGTGGCCGCCGCCACAGTCCGCAACTGCTCCACCATGAATACTGCCCGTGCCATTTATGATGGCTGCATCCTCAGGTACGAGAACAATGACTTCTTCAAGCAGAATCTCATTTCTAGCATCCACACACTTTGTGGAAATCAGACTGCAGATGAAAGCACTGGTTTTGGTGCAGTTGGACGCCAAGTGCTGATGGATCTACAAATAGCAACACCAAAAATTAGTGGCTACTTTGCAGCTACCAAGACACAAGTGGAAGGCGGTGCAATCTATGCCATTGCACAATGTGCTGAAACTCTCACTCAAGACACTTGTTTGGATTGTTTGTCATCTGAACAGAGAGACTTACAAGATTGTCTTCCCAGTACAAATGGTAGGGGATTCGATCCTCCTGTGTGCTTTATGAGATACTCGGCGACACCCTTCTTTGCTGATAACCAAACCATTGATATCACTTCCTTTTTAAAACAAGGAGGAGGAGGTTCAATCAAGAAGTGGGCCATTATTGGTGGTGGTGTAGTAGGTGCACTCCTTGTTGTGATCCTTATTCCATTATTACCCAGGCATAGCGGATCCCAAAGTCCTAAGAGAGTTCCTAGAACAGGTACCATAATGGGAGCAACTGAGTTGAAAGCTCCAACCAAGTACAAGTATAGTGACTTGAAAGCTGCAACAAAAAATTTTAGCGAGAAAAATAAATTAGGAGAAGGAGGCTTTGGTGCAGTATACAAGGGAACCATGAAAAATGGAAAAATTGTTGCTGTCAAGAAATTAATTTCAGGAAATTCCAACCAGATGGATGTTGAATTTGAAAGTGAAGTAACAGTTATAAGTAATGTTCATCATAGAAATCTTGTTCGGCTTCTTGGTTGTTGCAGTATAGGCGAAGAAAGAATCCTTGTTTATGAATACATGGCAAACACCAGCTTAGACAAATTCATATTTGGAAAAAGAAAAGGTTCCCTCAACTGGAAACAACGCTACGATATAATTTTGGGCACAGCAAGGGGATTGACTTATCTACATGAGGAATTTCATGTTTCTATCATACATAGAGATATTAAGAGTGGCAACATCCTCTTGGATGAACAACTTCAGCCCAAAATTTCTGACTTTGGGTTGGTGAAACTCCTTCCAGGGGATAAATCTCATATTCGCACAAGAGTTGCAGGAACATTGGGATACACAGCACCTGAATATGTACTCCAAGGTCAATTATCAGAAAAGGCTGATACATACAGCTATGGAATTGTAGTATTAGAAATCATAAGTGGTCAAAAGAGTACAGATGTGAAAGTTGATGATGATGGTGATGAAGAATATCTTCTTCGACGAGCATGGAAGTTGCATGAGAGAGGCATGCTTTTGGAGTTAGTGGACAAAAGCTTAGACCCTAATAACTATGACGCAGAAGAAGTGAAGAAAGTCATAAGCATTGCTTTGTTGTGCACTCAAGCATCGGCTGCAATGAGGCCATCCATGTCTGAAGTTGTAGTCCTACTTAGTTGCAATGACTTACTTCAGCATATGAGACCTTCAATGCCTATTTTTATTGGATCAAATTCAAGGCTTCACAGAGTTATCTCTGCTTCAACTGGTTCCTCTACATCTAATGTTACTCCCTCCAATTCTATAGTACCTGTTCGATGA 1953 0.4219 MVQLKLVALTLLVLWSWWNFEGAVGDPQTLLLKFECSVVSVHDSANFFQNLNASLANLKSQLVSNQSKHFVTAQSTTGTDPVYAMFQCRNYLSNTDCVTCFAVAAATVRNCSTMNTARAIYDGCILRYENNDFFKQNLISSIHTLCGNQTADESTGFGAVGRQVLMDLQIATPKISGYFAATKTQVEGGAIYAIAQCAETLTQDTCLDCLSSEQRDLQDCLPSTNGRGFDPPVCFMRYSATPFFADNQTIDITSFLKQGGGGSIKKWAIIGGGVVGALLVVILIPLLPRHSGSQSPKRVPRTGTIMGATELKAPTKYKYSDLKAATKNFSEKNKLGEGGFGAVYKGTMKNGKIVAVKKLISGNSNQMDVEFESEVTVISNVHHRNLVRLLGCCSIGEERILVYEYMANTSLDKFIFGKRKGSLNWKQRYDIILGTARGLTYLHEEFHVSIIHRDIKSGNILLDEQLQPKISDFGLVKLLPGDKSHIRTRVAGTLGYTAPEYVLQGQLSEKADTYSYGIVVLEIISGQKSTDVKVDDDGDEEYLLRRAWKLHERGMLLELVDKSLDPNNYDAEEVKKVISIALLCTQASAAMRPSMSEVVVLLSCNDLLQHMRPSMPIFIGSNSRLHRVISASTGSSTSNVTPSNSIVPVR* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1884 650 ProSiteProfiles Gnk2-homologous domain profile. 139 243 IPR002902 -
Gso11g1884 650 Gene3D - 139 243 IPR038408 -
Gso11g1884 650 Gene3D - 29 133 IPR038408 -
Gso11g1884 650 ProSiteProfiles Protein kinase domain profile. 329 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1884 650 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Gso11g1884 650 CDD STKc_IRAK 335 599 - -
Gso11g1884 650 SUPERFAMILY Protein kinase-like (PK-like) 314 622 IPR011009 -
Gso11g1884 650 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 15 641 - -
Gso11g1884 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Gso11g1884 650 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 15 641 - -
Gso11g1884 650 ProSitePatterns Protein kinases ATP-binding region signature. 335 358 IPR017441 GO:0005524
Gso11g1884 650 Gene3D Transferase(Phosphotransferase) domain 1 406 612 - -
Gso11g1884 650 Pfam Protein kinase domain 329 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1884 650 SMART serkin_6 329 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1884 650 Pfam Salt stress response/antifungal 150 240 IPR002902 -
Gso11g1884 650 Pfam Salt stress response/antifungal 41 130 IPR002902 -
Gso11g1884 650 Gene3D Phosphorylase Kinase; domain 1 293 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1884 Gso-Chr11 33146379 33155881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1884 2 636 Receptor kinase-like Gene Family AT1G70520 36.265 1.10e-125 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso11g1884 Pkinase 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1884 - - gmx:100816764 1227.23