Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1883 ATGGTGCAACTCAAGGTCGTAGCCTTAACATTGTTGGTGTTGTGGTCATGGCGGAACTTTGAGGGTGCTGTAGGAGACCCTCAACTCTATCTACTCACATTGGAGTGCAGCGGATTCATGGCACCCAACTTGTCGAACTTCTACCAAAACCTAAACGCAAGTTTGGCAGACCTGAGAGCACAGGTGACCAGCCAAAGCAGGCACTTTGCCACGGCTCAATCAACTAGCCGGACAGACCCTGTCTATGCAATGTTCCAATGCAGGAACTACCTCTCCATCACTGACTGCGCCACCTGCTTAGCCGCCGCCGCCACTGAAATCCGGAACTGCTCCGTCGGAACCAACGGTGCCCATGTAGTTTATGATGGCTGCTTCCTCAGGTACGAGAGCACTGACTCCTTCAACCAGATCAGTTCTAGCAGCCACACACTTTGTGGAAATCAGACTGCCGATGAAAGCACTGGTTATGGTGCAGTTGGACAGCAAGTGCTGATGGATCTACAAATCGCAACACCCAAAATTAGTGGCTATTTTGCCGCTACCAAAACACAAGTGTCTGGAGGTGCAATCTATGCCGTTGCACAATGTGCTGAGACTTTCACACAAGACAATTGTTTGGATTGTTTATCAAATGAACAAAGCAGCATGCAAGGTTGTCTTCCCAATACAAATGGTAGGGCATTTGATCCTCCTGGCTGCTTTATGAGATACTCGGAGACACCCTTCTTTGCTGATAACCAAACCATTGATATCAGTCCCTTCTTAAAACAAGGAGGAGTAGGTTCAAACAAGAAGTGGGTCATTATTGGTTGTGGTTTTGGAGGTGCACTCCTTGTTGTGATCCTTATTTCATTATTTCCCTGGAATAGAAGATCCCAAAGTCCGAAGAGAACTCCTAGAAGAAGCATAATGGGAGCAACTGATTTGAATGGTCCAACCAAGTACAGATATAGTGACTTGAAAGCTGCAACAAAAAACTTTAATGAGAAAAATAAACTAGGAGAAGGAGGCTTTGGTGCCGTATACAAGGGGACTATGAAAAATGGGAAAGTTGTTGCAGTAAAAAAATTAATTTCAGGAGATTTCAACAAGGTAGATGACGAATTTGAAAGTGAAGTAACACTTATAAGTAATGTTCATCATAGAAATCTGGTTCGACTTCTTGGTTGTTGCAGTGAAGGTCAAGAAAGAATCCTTGTTTACCAATACATGGCAAACACCAGCCTAGACAAATTCTTATTTGGAAAAAGAAAAGGTTCCCTCAACTGGAAACAACGCTATGATATAATTTTGGGCACAGCACGGGGATTGACTTATCTACATGAGGAATTTCATGTTTCTATCATACATAGAGATATTAAGAGTGGCAATATCCTATTGGATGAACAACTTCAGCCCAAAATTTCTGATTTTGGGTTGGCGAAACTCCTACCAGAAGACCAATCTCATGTTCGCACAAGAGTTGCAGGAACATTGGGATACACAGCACCTGAGTATGTACTCCATGGTCAATTATCAGAAAAAGCTGATACATACAGCTATGGAATTGTAGCCTTAGAAATCATAAGTGGTCAAAAGAGTACTGATGTAAAAGTTGTTGATGACGATGGTGATGAAGAATATCTTCTTCGACGAGCATGGAAGTTGTATGAGAGAGGCATGCTTTTGGAGTTAGTAGACAAAAGCTTAGACCCAAATAACTATGATGCAGAAGAAGTGAAGAAAGTCATAGCCATTGCTTTGTTGTGCACTCAAGCATCGGCTGCAATGAGGCCAGCTATGTCTGAAGTAGTAGTCTTACTCAACTGCAATAACTTACTTGAGCATATGAGACCTTCAATGCCTATCTTTATTGAGTCGAATTTAAGGCCTCACAGAGATATATTTGCGTCAACGGGTTCCTCAACATCTAATGCTACTACCTCCAATTCTATATAG 1938 0.4262 MVQLKVVALTLLVLWSWRNFEGAVGDPQLYLLTLECSGFMAPNLSNFYQNLNASLADLRAQVTSQSRHFATAQSTSRTDPVYAMFQCRNYLSITDCATCLAAAATEIRNCSVGTNGAHVVYDGCFLRYESTDSFNQISSSSHTLCGNQTADESTGYGAVGQQVLMDLQIATPKISGYFAATKTQVSGGAIYAVAQCAETFTQDNCLDCLSNEQSSMQGCLPNTNGRAFDPPGCFMRYSETPFFADNQTIDISPFLKQGGVGSNKKWVIIGCGFGGALLVVILISLFPWNRRSQSPKRTPRRSIMGATDLNGPTKYRYSDLKAATKNFNEKNKLGEGGFGAVYKGTMKNGKVVAVKKLISGDFNKVDDEFESEVTLISNVHHRNLVRLLGCCSEGQERILVYQYMANTSLDKFLFGKRKGSLNWKQRYDIILGTARGLTYLHEEFHVSIIHRDIKSGNILLDEQLQPKISDFGLAKLLPEDQSHVRTRVAGTLGYTAPEYVLHGQLSEKADTYSYGIVALEIISGQKSTDVKVVDDDGDEEYLLRRAWKLYERGMLLELVDKSLDPNNYDAEEVKKVIAIALLCTQASAAMRPAMSEVVVLLNCNNLLEHMRPSMPIFIESNLRPHRDIFASTGSSTSNATTSNSI* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1883 645 Pfam Protein kinase domain 327 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1883 645 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Gso11g1883 645 Pfam Salt stress response/antifungal 149 239 IPR002902 -
Gso11g1883 645 Pfam Salt stress response/antifungal 42 130 IPR002902 -
Gso11g1883 645 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 15 641 - -
Gso11g1883 645 SMART serkin_6 327 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1883 645 Gene3D - 30 132 IPR038408 -
Gso11g1883 645 Gene3D - 138 242 IPR038408 -
Gso11g1883 645 ProSitePatterns Protein kinases ATP-binding region signature. 333 356 IPR017441 GO:0005524
Gso11g1883 645 SUPERFAMILY Protein kinase-like (PK-like) 311 625 IPR011009 -
Gso11g1883 645 CDD STKc_IRAK 333 602 - -
Gso11g1883 645 ProSiteProfiles Protein kinase domain profile. 327 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1883 645 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 15 641 - -
Gso11g1883 645 Gene3D Phosphorylase Kinase; domain 1 290 403 - -
Gso11g1883 645 ProSiteProfiles Gnk2-homologous domain profile. 138 242 IPR002902 -
Gso11g1883 645 Gene3D Transferase(Phosphotransferase) domain 1 404 611 - -
Gso11g1883 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1883 Gso-Chr11 33139804 33143721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1883 2 644 Receptor kinase-like Gene Family AT1G70520 36.103 3.42e-125 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso11g1883 Pkinase 3.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1883 - - gmx:100775608 998.423