Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1882 ATGAAACTCGTAACCTTAACCTTGTTGATGTTGTGGTCATGGTGGAGCTTTGAGGGTGCAGTAGGAGACCCTCAAACTCTATTACTCAAACAGGATTGCAGCGGATTCACGGCACCCAACTTGTCCAACTTCAACCAAAATCTAAACGCAAGTTTGGCAGACCTGAGAGCAGAAGTGAGCAACCAAAGGAAGCACTTTGCCACTTCTCAATCAACCACCGGAACGAGTCCTGTCTATGCCATGATTCAATGCAGGAACTACCTCTCCAACACCGACTGCGCTGCCTGCCTCGCCGCCGCCGACGCCAAGATTCGCAACTGCTCCACCGGAGCTAACGGTGCCCGTGTCATTTACGACGGCTGCTTCCTCAGGTACGAGAGCAATGATTTCTTTGCCCAGATCATGCCTCGCAGCAGCATACTTTGTGGAAGTCAGAGTGCAGATGAAAGCACAGCTTTCAGTGAAGCTGGACAACAAGTACTAACGGATCTACAAATAGCAACACCAAAAATCACTGGCTACTATGCAGCTACCAAGACACAAGTGGCTGGTGGTGCAATCTATGCCATTGCACAATGTGCTGAAACTCTCACACAAGACAATTGTTTGGCATGTTTGTCAAATGAACAGACCACCGTACAAGGTTGTCTTCCCAATACAAATGGTAGGGCATTCGATGCAGGGTGCTTTATGAGATACTCAGAGACACCCTTCTTTTCTGATAAGCAAACCATTGATATCGCTCCCTTCTTAAACCAAGGAGGACGTTCAACTAAGAAGTGGTTCATTATTGGTGGTGTTGTTGGGGGTTTAGTCCTTGTTGTGATCCTTCTTTTATCATTTTTAATTATAATTCCCTGGTGTAGAAGATCCCAAATTCCCAAAAGAGTTCCTAGAGGTAACATATTGGAAGGGACTCAGTTGAAAGGTCCAACCAAGTTTAAGTATAGTGACTTGAAAGCTGCAACGAAAAACTTTAGTGAGAAAAATAAACTAGGAGAAGGAGGCTTTGGAGCTGTATACAAGGGAACTATGAAAAATGGGAAAGTTGTTGCAGTGAAAAAATTAATTTCAGGAAATTCCAGCAAGATAGATGACGACTTTGAAAGTGAAGTAATGCTTATAAGTAATGTTCATCATAGAAATCTGGTTCAGCTTCTTGGTTGTTGCAGTAAAGGCCAAGATAGAATCCTTGTCTATGAATACATGGCAAACAACAGCCTCGACAAATTTTTATTTGGTAACAGAAGATGTTCCCTTAACTGGAAACAACGCTATGATATAATTTTGGGCACTGCAAGGGGATTGACTTATCTACATGAGGAATTTCATGTTTCTATCATACATAGAGATATCAAGAGTTGCAATATCCTCTTGGATGAAGAACTTCAGCCCAAAATTTCTGATTTTGGCTTGGTAAAGCTCCTTCCTGAAGACAAATCTCATCTCAGTACAAGATTTGCAGGAACAGTGGGATACACAGCACCTGAGTATGCACTCCATGGTCAATTATCAAAAAAGGCTGATACATACAGCTATGGAATTGTAGTGCTAGAAATCATAAGTGGTCAAAAGAGTACTGATGTGAGAGTTGATGATGATGGTGAGGAAGAGTCCCTTCTTCGACAAGCATGGAAGTTGTATGAGAGAGGCATGCACTTGGAGTTGGTGGACGAAACCTTGAATGATAACTATGATGCAGAAGAAGTGAAGAAAATCATAGAAATTGCTTTGTTGTGTACTCAAGCATCGGCTGCGATGAGACCAGCTATGTCTGAAGTAGTAGTGCTACTCAGTAGCAATGCACTTGAGCATATGAGACCTTCAATGCCTATCTTTATTGAGTCTAAATTAAAGCCCCACAGAGATATTTTTGCCTCAACTAGTTCCTCTACATCTAATGCTACTGCCCCCAGTTCTATAGTACCTGCTCGATGA 1938 0.4252 MKLVTLTLLMLWSWWSFEGAVGDPQTLLLKQDCSGFTAPNLSNFNQNLNASLADLRAEVSNQRKHFATSQSTTGTSPVYAMIQCRNYLSNTDCAACLAAADAKIRNCSTGANGARVIYDGCFLRYESNDFFAQIMPRSSILCGSQSADESTAFSEAGQQVLTDLQIATPKITGYYAATKTQVAGGAIYAIAQCAETLTQDNCLACLSNEQTTVQGCLPNTNGRAFDAGCFMRYSETPFFSDKQTIDIAPFLNQGGRSTKKWFIIGGVVGGLVLVVILLLSFLIIIPWCRRSQIPKRVPRGNILEGTQLKGPTKFKYSDLKAATKNFSEKNKLGEGGFGAVYKGTMKNGKVVAVKKLISGNSSKIDDDFESEVMLISNVHHRNLVQLLGCCSKGQDRILVYEYMANNSLDKFLFGNRRCSLNWKQRYDIILGTARGLTYLHEEFHVSIIHRDIKSCNILLDEELQPKISDFGLVKLLPEDKSHLSTRFAGTVGYTAPEYALHGQLSKKADTYSYGIVVLEIISGQKSTDVRVDDDGEEESLLRQAWKLYERGMHLELVDETLNDNYDAEEVKKIIEIALLCTQASAAMRPAMSEVVVLLSSNALEHMRPSMPIFIESKLKPHRDIFASTSSSTSNATAPSSIVPAR* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1882 645 Gene3D Phosphorylase Kinase; domain 1 301 402 - -
Gso11g1882 645 Pfam Salt stress response/antifungal 39 127 IPR002902 -
Gso11g1882 645 Pfam Salt stress response/antifungal 145 235 IPR002902 -
Gso11g1882 645 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 16 642 - -
Gso11g1882 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Gso11g1882 645 ProSiteProfiles Protein kinase domain profile. 326 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1882 645 ProSiteProfiles Gnk2-homologous domain profile. 26 130 IPR002902 -
Gso11g1882 645 Coils Coil 45 65 - -
Gso11g1882 645 CDD STKc_IRAK 332 595 - -
Gso11g1882 645 SMART serkin_6 326 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1882 645 Gene3D - 137 238 IPR038408 -
Gso11g1882 645 Gene3D - 25 130 IPR038408 -
Gso11g1882 645 ProSitePatterns Protein kinases ATP-binding region signature. 332 355 IPR017441 GO:0005524
Gso11g1882 645 SUPERFAMILY Protein kinase-like (PK-like) 310 627 IPR011009 -
Gso11g1882 645 Gene3D Transferase(Phosphotransferase) domain 1 403 610 - -
Gso11g1882 645 Pfam Protein tyrosine and serine/threonine kinase 329 596 IPR001245 GO:0004672|GO:0006468
Gso11g1882 645 ProSiteProfiles Gnk2-homologous domain profile. 135 238 IPR002902 -
Gso11g1882 645 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 16 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1882 Gso-Chr11 33128795 33133147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1882 6 623 Receptor kinase-like Gene Family AT1G70520 36.604 6.30e-128 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso11g1882 PK_Tyr_Ser-Thr 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1882 - - gmx:100815179 1219.14