Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1880 ATGGTGGTGCAAGTGCAACACAATCTCCTCTTAGTCATAACTTTCTTGATGTTGTTGTGGTCATGGTGGAGCCTTTTGGGTGCACTAGGAGACCCTCAAACCCATTTAATCAACAAGGGGTGTAGCCAATACAACGCAACCGACTTGTCCAACTTCAACCAAAACCTAAACGCAACTTTGGATGACCTTAGAGCACAGGTTAGCAACCAAAGCAAGCACTTTGCCACGGCTCAAGAAGCTAGAGGAGCAGACCCTGTCTATGCCATGTTTCAGTGTAGGAACTACCTCTCCACCGCCGACTGCGCCGCCTGCTTCGTGGTTGCCGCCGCCCAAATCCGCAATTGCTCAGCCGGAGCCAACGGTGCCCGGGTCATCTATGATGGCTGCTTCCTTAGGTATGAGAGCAATGGCTTCTTTGACCAGACCACACTGGCTGGCAACAGTATGATTTGTGGAAATCAGACAGCAGTAGGAGCCACCACATCTTTTAATACAACTGCACAGCAAGTGCTAATGGACCTGCAAATTGCAACACCAAAAATTACTGGTTTCTTTGCAGCTACCAAGACACAATTGGCTGGTGGTGGTGCAATCTATGCCATTGCACAATGTGCTGAAACTGCCACAGAGAGTGCTTGTTTGGATTGCCTCACAGTTGGATACAACAACATACATATTTGTTTACCCAACACAGATGGCAGAGCATTTGATGCAGGATGCTTTATGAGATACTCAGAGACAGCATTTTTTGCTGATAACCAGACCATTGATATCGCACCCTTCTTGAAACAAGGAGGTTCAAGCAACAAGAAGGGAGCCATTATAGGCGGTGTTGTTGGAGGTGTAGGTCTTGTTGTAATCCTCCTTGCACTATTTGGCTTGCTTAGACGGTATAAGAAACCCAAGAGGGTTCCTAGAGGTGACATATTGGGAGCAACCGAGTTGAAAGGTCCAGTTCCCTATAGGTACAAGGATTTGAAGACTGCAACAAAAAATTTCAGTGATGAAAATAAACTAGGAGAAGGAGGTTTTGGAGATGTATACAAGGGCACTTTGAAAAATGGGAAAATAGTTGCAGTCAAAAAATTAATCTTAGGCCAATCCGGGAAGATGGATGAACAATTTGAAAGTGAAGTCAAGCTTATAAGTAATGTTCATCACAAGAATCTGGTTCGACTTCTTGGATGTTGCAGTAAAGGTCAAGAGAGAATCCTTGTTTATGAATACATGGCAAATAAAAGCTTGGACAGATTCTTATTTGGTGAAAATAAGGGTTCTCTCAACTGGAAACAAAGATATGATATAATTTTAGGCACAGCAAAGGGTTTGGCCTATCTACATGAGGATTTCCACGTTTGCATCATACATAGGGATATAAAGACCAGCAATATCCTCTTGGATGATGAGATGCAGCCAAGAATTGCTGATTTTGGGTTGGCAAGACTTCTACCAGAGGACCAATCTCATCTCAGCACAAGATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCCATCCATGGTCAGTTATCTGAGAAGGCTGATGCATACAGCTTTGGTGTTGTAGTCCTTGAAATCATAAGTGGCCAAAAGAGCAGTGAATTGAGGACAGATGCTGATGGTGAATTCCTCCTTCAAAGGGCATGGAAACTATACGTGCAAGATATGCATTTGGAGTTGGTTGACAAGACATTGTTGGACCCTGAAGACTATGATGCAGAAGAAGTGAAGAAAATCATAGAGATTGCTTTGCTTTGCACTCAAGCATCAGCTGCTGCAAGGCCAGCAATGTCTGAAATAGTAGCTTTTCTCAAAAGCAAGAACTCACTGGGGCAAATAAGGCCTTCTATGCCTGTTTTTGTAGAAACTAACTTAAGGACTCGGGCAGAAACCTCTACCTCAACTGGTTCCTCCACATCTAATGCTACTGCTTCCATTTCTATGCTCTCAGCTCGATGA 1962 0.4393 MVVQVQHNLLLVITFLMLLWSWWSLLGALGDPQTHLINKGCSQYNATDLSNFNQNLNATLDDLRAQVSNQSKHFATAQEARGADPVYAMFQCRNYLSTADCAACFVVAAAQIRNCSAGANGARVIYDGCFLRYESNGFFDQTTLAGNSMICGNQTAVGATTSFNTTAQQVLMDLQIATPKITGFFAATKTQLAGGGAIYAIAQCAETATESACLDCLTVGYNNIHICLPNTDGRAFDAGCFMRYSETAFFADNQTIDIAPFLKQGGSSNKKGAIIGGVVGGVGLVVILLALFGLLRRYKKPKRVPRGDILGATELKGPVPYRYKDLKTATKNFSDENKLGEGGFGDVYKGTLKNGKIVAVKKLILGQSGKMDEQFESEVKLISNVHHKNLVRLLGCCSKGQERILVYEYMANKSLDRFLFGENKGSLNWKQRYDIILGTAKGLAYLHEDFHVCIIHRDIKTSNILLDDEMQPRIADFGLARLLPEDQSHLSTRFAGTLGYTAPEYAIHGQLSEKADAYSFGVVVLEIISGQKSSELRTDADGEFLLQRAWKLYVQDMHLELVDKTLLDPEDYDAEEVKKIIEIALLCTQASAAARPAMSEIVAFLKSKNSLGQIRPSMPVFVETNLRTRAETSTSTGSSTSNATASISMLSAR* 654
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1880 653 Coils Coil 53 73 - -
Gso11g1880 653 ProSiteProfiles Protein kinase domain profile. 333 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1880 653 Gene3D - 33 138 IPR038408 -
Gso11g1880 653 Gene3D - 146 249 IPR038408 -
Gso11g1880 653 ProSiteProfiles Gnk2-homologous domain profile. 145 249 IPR002902 -
Gso11g1880 653 ProSitePatterns Protein kinases ATP-binding region signature. 339 362 IPR017441 GO:0005524
Gso11g1880 653 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 27 650 - -
Gso11g1880 653 Pfam Protein tyrosine and serine/threonine kinase 336 605 IPR001245 GO:0004672|GO:0006468
Gso11g1880 653 CDD STKc_IRAK 339 606 - -
Gso11g1880 653 Gene3D Phosphorylase Kinase; domain 1 309 409 - -
Gso11g1880 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Gso11g1880 653 ProSiteProfiles Gnk2-homologous domain profile. 34 138 IPR002902 -
Gso11g1880 653 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 27 650 - -
Gso11g1880 653 SMART serkin_6 333 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1880 653 Pfam Salt stress response/antifungal 151 246 IPR002902 -
Gso11g1880 653 Pfam Salt stress response/antifungal 41 135 IPR002902 -
Gso11g1880 653 Gene3D Transferase(Phosphotransferase) domain 1 410 616 - -
Gso11g1880 653 SUPERFAMILY Protein kinase-like (PK-like) 317 624 IPR011009 -
Gso11g1880 653 MobiDBLite consensus disorder prediction 629 653 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso11g1880 Gso-Chr11 33027432 33033767 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1880 10 653 Receptor kinase-like Gene Family AT1G70520 35.812 6.40e-126 385
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso11g1880 PK_Tyr_Ser-Thr 1e-49 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1880 - - gmx:100813585 1229.16