LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso11g1880	ATGGTGGTGCAAGTGCAACACAATCTCCTCTTAGTCATAACTTTCTTGATGTTGTTGTGGTCATGGTGGAGCCTTTTGGGTGCACTAGGAGACCCTCAAACCCATTTAATCAACAAGGGGTGTAGCCAATACAACGCAACCGACTTGTCCAACTTCAACCAAAACCTAAACGCAACTTTGGATGACCTTAGAGCACAGGTTAGCAACCAAAGCAAGCACTTTGCCACGGCTCAAGAAGCTAGAGGAGCAGACCCTGTCTATGCCATGTTTCAGTGTAGGAACTACCTCTCCACCGCCGACTGCGCCGCCTGCTTCGTGGTTGCCGCCGCCCAAATCCGCAATTGCTCAGCCGGAGCCAACGGTGCCCGGGTCATCTATGATGGCTGCTTCCTTAGGTATGAGAGCAATGGCTTCTTTGACCAGACCACACTGGCTGGCAACAGTATGATTTGTGGAAATCAGACAGCAGTAGGAGCCACCACATCTTTTAATACAACTGCACAGCAAGTGCTAATGGACCTGCAAATTGCAACACCAAAAATTACTGGTTTCTTTGCAGCTACCAAGACACAATTGGCTGGTGGTGGTGCAATCTATGCCATTGCACAATGTGCTGAAACTGCCACAGAGAGTGCTTGTTTGGATTGCCTCACAGTTGGATACAACAACATACATATTTGTTTACCCAACACAGATGGCAGAGCATTTGATGCAGGATGCTTTATGAGATACTCAGAGACAGCATTTTTTGCTGATAACCAGACCATTGATATCGCACCCTTCTTGAAACAAGGAGGTTCAAGCAACAAGAAGGGAGCCATTATAGGCGGTGTTGTTGGAGGTGTAGGTCTTGTTGTAATCCTCCTTGCACTATTTGGCTTGCTTAGACGGTATAAGAAACCCAAGAGGGTTCCTAGAGGTGACATATTGGGAGCAACCGAGTTGAAAGGTCCAGTTCCCTATAGGTACAAGGATTTGAAGACTGCAACAAAAAATTTCAGTGATGAAAATAAACTAGGAGAAGGAGGTTTTGGAGATGTATACAAGGGCACTTTGAAAAATGGGAAAATAGTTGCAGTCAAAAAATTAATCTTAGGCCAATCCGGGAAGATGGATGAACAATTTGAAAGTGAAGTCAAGCTTATAAGTAATGTTCATCACAAGAATCTGGTTCGACTTCTTGGATGTTGCAGTAAAGGTCAAGAGAGAATCCTTGTTTATGAATACATGGCAAATAAAAGCTTGGACAGATTCTTATTTGGTGAAAATAAGGGTTCTCTCAACTGGAAACAAAGATATGATATAATTTTAGGCACAGCAAAGGGTTTGGCCTATCTACATGAGGATTTCCACGTTTGCATCATACATAGGGATATAAAGACCAGCAATATCCTCTTGGATGATGAGATGCAGCCAAGAATTGCTGATTTTGGGTTGGCAAGACTTCTACCAGAGGACCAATCTCATCTCAGCACAAGATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCCATCCATGGTCAGTTATCTGAGAAGGCTGATGCATACAGCTTTGGTGTTGTAGTCCTTGAAATCATAAGTGGCCAAAAGAGCAGTGAATTGAGGACAGATGCTGATGGTGAATTCCTCCTTCAAAGGGCATGGAAACTATACGTGCAAGATATGCATTTGGAGTTGGTTGACAAGACATTGTTGGACCCTGAAGACTATGATGCAGAAGAAGTGAAGAAAATCATAGAGATTGCTTTGCTTTGCACTCAAGCATCAGCTGCTGCAAGGCCAGCAATGTCTGAAATAGTAGCTTTTCTCAAAAGCAAGAACTCACTGGGGCAAATAAGGCCTTCTATGCCTGTTTTTGTAGAAACTAACTTAAGGACTCGGGCAGAAACCTCTACCTCAACTGGTTCCTCCACATCTAATGCTACTGCTTCCATTTCTATGCTCTCAGCTCGATGA	1962	0.4393	MVVQVQHNLLLVITFLMLLWSWWSLLGALGDPQTHLINKGCSQYNATDLSNFNQNLNATLDDLRAQVSNQSKHFATAQEARGADPVYAMFQCRNYLSTADCAACFVVAAAQIRNCSAGANGARVIYDGCFLRYESNGFFDQTTLAGNSMICGNQTAVGATTSFNTTAQQVLMDLQIATPKITGFFAATKTQLAGGGAIYAIAQCAETATESACLDCLTVGYNNIHICLPNTDGRAFDAGCFMRYSETAFFADNQTIDIAPFLKQGGSSNKKGAIIGGVVGGVGLVVILLALFGLLRRYKKPKRVPRGDILGATELKGPVPYRYKDLKTATKNFSDENKLGEGGFGDVYKGTLKNGKIVAVKKLILGQSGKMDEQFESEVKLISNVHHKNLVRLLGCCSKGQERILVYEYMANKSLDRFLFGENKGSLNWKQRYDIILGTAKGLAYLHEDFHVCIIHRDIKTSNILLDDEMQPRIADFGLARLLPEDQSHLSTRFAGTLGYTAPEYAIHGQLSEKADAYSFGVVVLEIISGQKSSELRTDADGEFLLQRAWKLYVQDMHLELVDKTLLDPEDYDAEEVKKIIEIALLCTQASAAARPAMSEIVAFLKSKNSLGQIRPSMPVFVETNLRTRAETSTSTGSSTSNATASISMLSAR*	654

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso11g1880	653	Coils	Coil	53	73	-	-
	Gso11g1880	653	ProSiteProfiles	Protein kinase domain profile.	333	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso11g1880	653	Gene3D	-	33	138	IPR038408	-
	Gso11g1880	653	Gene3D	-	146	249	IPR038408	-
	Gso11g1880	653	ProSiteProfiles	Gnk2-homologous domain profile.	145	249	IPR002902	-
	Gso11g1880	653	ProSitePatterns	Protein kinases ATP-binding region signature.	339	362	IPR017441	GO:0005524
	Gso11g1880	653	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	27	650	-	-
	Gso11g1880	653	Pfam	Protein tyrosine and serine/threonine kinase	336	605	IPR001245	GO:0004672\|GO:0006468
	Gso11g1880	653	CDD	STKc_IRAK	339	606	-	-
	Gso11g1880	653	Gene3D	Phosphorylase Kinase; domain 1	309	409	-	-
	Gso11g1880	653	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	454	466	IPR008271	GO:0004672\|GO:0006468
	Gso11g1880	653	ProSiteProfiles	Gnk2-homologous domain profile.	34	138	IPR002902	-
	Gso11g1880	653	PANTHER	CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN	27	650	-	-
	Gso11g1880	653	SMART	serkin_6	333	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso11g1880	653	Pfam	Salt stress response/antifungal	151	246	IPR002902	-
	Gso11g1880	653	Pfam	Salt stress response/antifungal	41	135	IPR002902	-
	Gso11g1880	653	Gene3D	Transferase(Phosphotransferase) domain 1	410	616	-	-
	Gso11g1880	653	SUPERFAMILY	Protein kinase-like (PK-like)	317	624	IPR011009	-
	Gso11g1880	653	MobiDBLite	consensus disorder prediction	629	653	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso11g1880	Gso-Chr11	33027432	33033767	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso11g1880	10	653	Receptor kinase-like Gene Family	AT1G70520	35.812	6.40e-126	385

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gso11g1880		PK_Tyr_Ser-Thr	1e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso11g1880	-		-	gmx:100813585	1229.16