Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1877 ATGAAGCTTTCAACATCAGGGTTGGGGCAGCAGGGACATGAAGGAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGTGCGGGGCCCCTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCAACAACTAATAGAGAAATTGATGGACATATTCCCAATTATCCTAGCTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTTACAATGCATGCAGATGTTGAAACGGATGAAGTATATGCTCAAATGACATTGCAGCCATTGACTCCGCAAGAGCAGAAGGATACATTTCTTCCTATGGAATTGGGCATTCCTAGTAAGCAGCCATCAAATTATTTTTGCAAGACGTTAACGGCCAGCGACACCAGCACACATGGGGGATTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCGCAGCAACCGCCGGCACAGGAACTAATTGCTAGGGATCTCCATGATGTTGAATGGAAATTTCGACATATTTTTCGAGGACAGCCAAAACGACACCTTCTTACTACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTTGTGGCTGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAACTTCTTTTGGGAATACGTCGTGCCAATCGACCGCAAACTGTAATGCCGTCATCTGTTCTATCCAGTGATAGCATGCATATTGGACTTCTTGCAGCCGCTGCCCATGCTGCAGCAACCAATAGCTGTTTTACCGTATTTTATAATCCAAGGGCTAGTCCATCTGAGTTCGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAGTCAAGTGTCCGCAGGTATATGGGTACAATAACTGGCATAAGTGATTTGGATTCTGTTAGGTGGCCGAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGAGAGAGACAACCACGAGTGTCTCTGTGGGAAATTGAGCCATTAACAACATTCCCGATGTATCCGTCATTATTTCCCCTCAGACTGAAGCGTCCATGGCATCCTGGCACCTCATCTTTGCATGATGGGAGAGATGAAGCTACTAACGGGTTAATGTGGCTGAGAGGTGGACCTGTAGACCAAGGTCTCAATTCCCTAAATTTTCAAGGAGCTGGCGGTATGTTGCCCTGGATGCAGCAGAGACTGGATCCAACTTTACTAGGAAATGATCAGAATCAACAGTACCAAGCCATGTTGGCAGCTGGTTTACAGAACTTAGGTAGTGGATATCTCATGAAGCAACAATTGATGAATTTTCAGCAGCCTTACCACTATCTTCAACAATCTGGAAACAGTAATTCTCCTTTGCAACTTCAGCAGCAGCAACCAATTCAACAATCCGTGTCTTCTAACATGCTGCAGCCACAAACACATGTACTGACAGAGAACCTATCTCAGCACCTCCTTCAGAAACCACATAACAATCAAGAAGTCCAGGCACAACAGCAGCAACATACTTATCAAGACTCGCTCTCAATTCCGGGTGATCAGCTCCATCAGAGACAACACTCTGGCATTCCTTCATCATCATATTCAAAACCGGATTTCTTGGATTCGAGCATGAAGTTCCCTGCTTCAGTTTCCCCTGGGCAAAACATGCTTAGTTCACTTTGTCCCGAAGGAAGTGGCAGTCTCTTGAATTTATCCAGGAGTGGTCAGTCCTTGCTGACCGAACAGTTACCCCAACAGCAATGGACTCAAAAATATGCACCTGTGCAGGTCAATGCCTATGGAAGCACTGTGTCACATCCACAATATTCCGGAAAAGATTCTGTAATGGTGCTACCACATTGTAACTCAGATGCCCAAAATTCTACTCTTTTTGGTGTCAATATCGATTCATCTGGCCTTCTCCTCCCCACCACCGTCCCTGGTTACACCACCTCGTCCGCTGACACTAATTCATCAACAATGCCATTAGCGGAGTCTGGTTTCCAGGGTTCTCTATATGGTTGCATGCAAGATTCATCGGAGTTGTTGCAAAGTGCAGGGCATACTGACCCAGAAAACCAGACTCAAACCTTTGTCAAGGTTTACAAATCAGGGTCAGTTGGACGCTCACTTGACATATCCCGGTTCAGCAGCTATCATGAACTGCGCGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTGTTCGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGATGATCCGTGGGAATCATTTGTCAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGACATTCAGAAAATGGGGGATCAAGCGGTAGAATCCCTTGCTCTAGGTTCAGGACAAAGGCTAAACGGCACTGGTGCTGAGTCTCAGGACATTGTTTCTGGACCACCATCAATCGGCTCACTTGAGTACTGA 2535 0.4592 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSLHDGRDEATNGLMWLRGGPVDQGLNSLNFQGAGGMLPWMQQRLDPTLLGNDQNQQYQAMLAAGLQNLGSGYLMKQQLMNFQQPYHYLQQSGNSNSPLQLQQQQPIQQSVSSNMLQPQTHVLTENLSQHLLQKPHNNQEVQAQQQQHTYQDSLSIPGDQLHQRQHSGIPSSSYSKPDFLDSSMKFPASVSPGQNMLSSLCPEGSGSLLNLSRSGQSLLTEQLPQQQWTQKYAPVQVNAYGSTVSHPQYSGKDSVMVLPHCNSDAQNSTLFGVNIDSSGLLLPTTVPGYTTSSADTNSSTMPLAESGFQGSLYGCMQDSSELLQSAGHTDPENQTQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGDQAVESLALGSGQRLNGTGAESQDIVSGPPSIGSLEY* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1877 844 MobiDBLite consensus disorder prediction 822 844 - -
Gso11g1877 844 SMART B3_2 128 230 IPR003340 GO:0003677
Gso11g1877 844 MobiDBLite consensus disorder prediction 471 495 - -
Gso11g1877 844 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Gso11g1877 844 Gene3D - 292 364 - -
Gso11g1877 844 ProSiteProfiles PB1 domain profile. 718 802 IPR000270 GO:0005515
Gso11g1877 844 Pfam AUX/IAA family 714 802 IPR033389 -
Gso11g1877 844 Gene3D - 714 807 - -
Gso11g1877 844 CDD B3_DNA 127 228 IPR003340 GO:0003677
Gso11g1877 844 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 829 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso11g1877 844 SUPERFAMILY CAD & PB1 domains 711 792 - -
Gso11g1877 844 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso11g1877 844 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Gso11g1877 844 PANTHER AUXIN RESPONSE FACTOR 1 829 - -
Gso11g1877 844 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Gso11g1877 844 MobiDBLite consensus disorder prediction 822 836 - -
Gso11g1877 844 Gene3D - 126 229 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1877 Gso-Chr11 32943295 32951070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1877 98 810 B3 DNA Binding Superfamily AT5G37020 69.018 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso11g1877 AUX_IAA 5e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1877 - - gmx:100784373 1659.04