Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1873 ATGGCAGAGACTAGTGAGAGGAAGAAACCCCCCGTAATAGAACCGCCGGACGACCTCCGTTGCCGCCGTACCGGCGGCCACACATGGCGGTGCAAACACTGGCGGATTCACGACCAGCCCTACTGCGAGGACCATTTCCTTGCCTTACGAGCCAATAAGAACAACAAAAAACCTAAGCCTCCTTCTACTTCTTCTGCTTCCGCTTCAGCGCAAAGAGACAATGCGAAGAGGCTTCGAGAACGAGACGAAGAAGAAGCAACTGTTCCGGAGAAAGGCAAACACAAGAAGAAGCTGAAACTCGAATCTCCGAAGGAGCAAGTGGAGCTATTACTACTCGACAGGAAAGCCAGGAGCAGAGAGAAGATCAAGCAAACGCTTATGCGATTGGATGAATGTCTCGAAATCGACGACGAAAAACCGCTCAAAACGACGAAGACGAAGTCGTTTTCTTCTTCGTCCAAGTCCAACGCTGCGAAGCCAAAAATCTCTGTTTCGGAGTCTGGGATGTGTCACCAGTGCCAGAAGAGTGATAGGACCGTCGCTCGCTGTCGGAAATGTCGCAAGCGGTTTTGCGTTCCTTGCATTCGGAGATGGTATCCACAAATGACCAAGGAGGCAATAGAAAAATCTTGTCCATATTGTCAAGGCAATTGTAATTGCAAATCATGTTTACGTAGAAAAGATGTATATGTGGATTCTGGAGATTTAGGAGTGCCTCAAAATAAAGATGAAAAGATTCGACATTTGAAGCATTTGGTGCGAGCATTGTATCCTTTTCTGGAACAATTTAATCATGAGCAGCAGTCGGAAATGGAGATGGAAGCAAAAACTAAAGGGTTATTGCTTTCAGATGTAGAAGTTAAGAAAATTGTTTGTTCCAAAGATGAACGTATTTATTGCAACAATTGCAAAACCTCTATTACTGATTTTCATAGGAGCTGCCCAAGTTGTTCATATGATCTTTGCCTTACTTGTTGCCGGGAAATTCGTTGCAATTTCTTGTCAGGGGAAATAGTTGAGCAGTGTGTTGTTGTTTCTAATGCTCATTCACATGGTGGAGAGCCTTTAGATCCGCACTCATGCAAGAAAGAATCGTCAGACATTTGTCTTGAATCGAGCTCTCTGAGACCAGAGCATTTGTGGAAGGCTATGAAAAATGGTGCGATCCCCTGTTCACCAAAGGATAATGGTGGTTGTGGATATGAATATCTTGAGCTGAAGTGCATATTTCCTCAAAATTGGATTTCAAAGTTAAGGGAAAAAGTGAAAAGATTAATCAAAGTACATGGGCTAGAAGATAAGCCCACAGTTTCTGCATGGTGTAGTTCCTGCTTCAAATCTCATGATGAAATTGGCTCAATCAATGAGAATTTGCGAAAAGCTGCCACTCGAGAAGGTTCAAGTGACAACTATTTGTATTGTCCTTCAGCTAGTGATGTTAAATATGGGGATCTTGAACATTTTCAGGGTCACTGGATTAAGGGAGAACCAGTTATTGTTAGGAATGCTCTTGAGTTAACCTCTGGCTTGAGCTGGGAGCCAATGGTAATGTGGCGTGCAATGCGTGAATTGACTTATCATGGTTCCAAGCATTTGAATGTGAAAGCAATTGACTGCCTAGATTGGTGTGAGGTTGAAATAAATATCCATCAATTTTTCAAGGGATACTCAGAGGGTCGTGCTCATTGTGATTCCTGGCCTGAGATGCTCAAGCTCAAAGATTGGCCTCCATCTAATCTATTTGAGCAGAAGTTACCACGTCATGGTATTGAGTTTATTAGTGCCTTACCCTACAAAGAGTATACACATCCTCGCACTGGTTTTCTTAACATGGCCACAAAGCTACCTGAAAAGTCTTTGAAACCTGACTTGGGACCAAAGACATATATAGCATATGGCTTTGCTGATGAGCTTGGACATGGAGATTCTGTGGCCAAGCTTCATTGTGACATGTCAGATGCGGTAAATATTTTGACACATACTGAAGATGTGACTTTCAGTTCTCAACATCTTACCAAAATAGAGATGTTGAAACAAAAATACGTTGCTGATTCTGCAGTGAAGTGCAAATCAACATTAGAAGAAAATATTTCAGTGCAGGCTAATGATTTGTCAGTTCTTAATTGGTCTTCCCTTATCCAAATGTCAAAAATGGAAAATGTTGGGCCCTGCAGAAAGCATGCTACTGCTAAACCACCAAATGATAGCATTCTTGAGAAAAATGGCAAGGCTATGGCTTCTGATAGAGAATTAAATTCTTCTACATCTGGAGTTGAAGTTCTAGTAGGTGTTAATGCTCCAGTGTTGCATGAAAATATCAGCTTAAATTCTTCAAGTGCTTTAACTGCTAATCATGCGGAAAGTCTTATGAAGGAAGATGAGATGGATCTTAGTAAGTGTGATGTTAACATGGTGGATGTGGAAGCTAAGGAGAAATGGAGCAGCCCTAAGGATATTAAAGTTGGAGATGGTAAGGAAGATTTTATCTCTTCACTTTGTATAATAAGAAATGATGAAGTGCAGGATGACATTGTTAATGAAATAGGAGGAAATTCAGGAATTTCATTTGAAATTGAAAATGGTGAAATGATAAACTCTGAAGAAAGGAATGCAATTATTGAGAGGGAAATTGTTGTCAAATCATCGCATGATTTAGATTTGAAGTCAGAATTAAATGCCTTGAGTAGCAAGTTACAAATTGGAAAAAAGGATTGGAAGGAGGAAAATGTCGAGGAAGTGAAAAAATCTAACACTGTTTCCTCTGTTGTGCATACTTCAATGAATGAGGCGCCGCAGCAGGATGCTGGATATATTAGTCAACCTGTGGACTCTGGAAATATGGATAGAGGACAAGAATTTGCCAAGGGAGGTGCTGTCTGGGATATTTTTCGGAGGCAAGATGTGCACAGGCTTGAGGAATACCTTAAGAAGTATTGTAGGGAATTCAGGCATCTCCATTGTTCTCAAGTGGAGAAGGTTTTTCACCCCATTCATGATCAAGTTTTTTATCTGACTTCTTATCATAAAAGTAAGCTCAAGGAAGAATTTGGAGTTGAACCTTGGACTTTTATACAAAACCTTGGTGAGGCTGTTTTTATACCTGCCGGGTGTCCCCATCAAGTTAGAAACTTAAAGTCGTGCATTAAGGTTGCTCTAGATTTTGTCTCTCCTGAAAATATTCAAGAGTGTATTCGTCTGACTGAGGAATTTCGTTCTCTTCCCAAAAACCATAAAGCAAAGGAAGACAAACTTGGGGTGAAGAAAATGTGTCTCTATGCATTACGCAAGGCTGCAGACGATTTGGAGAAGCTTGAAGGATAA 3321 0.411 MAETSERKKPPVIEPPDDLRCRRTGGHTWRCKHWRIHDQPYCEDHFLALRANKNNKKPKPPSTSSASASAQRDNAKRLRERDEEEATVPEKGKHKKKLKLESPKEQVELLLLDRKARSREKIKQTLMRLDECLEIDDEKPLKTTKTKSFSSSSKSNAAKPKISVSESGMCHQCQKSDRTVARCRKCRKRFCVPCIRRWYPQMTKEAIEKSCPYCQGNCNCKSCLRRKDVYVDSGDLGVPQNKDEKIRHLKHLVRALYPFLEQFNHEQQSEMEMEAKTKGLLLSDVEVKKIVCSKDERIYCNNCKTSITDFHRSCPSCSYDLCLTCCREIRCNFLSGEIVEQCVVVSNAHSHGGEPLDPHSCKKESSDICLESSSLRPEHLWKAMKNGAIPCSPKDNGGCGYEYLELKCIFPQNWISKLREKVKRLIKVHGLEDKPTVSAWCSSCFKSHDEIGSINENLRKAATREGSSDNYLYCPSASDVKYGDLEHFQGHWIKGEPVIVRNALELTSGLSWEPMVMWRAMRELTYHGSKHLNVKAIDCLDWCEVEINIHQFFKGYSEGRAHCDSWPEMLKLKDWPPSNLFEQKLPRHGIEFISALPYKEYTHPRTGFLNMATKLPEKSLKPDLGPKTYIAYGFADELGHGDSVAKLHCDMSDAVNILTHTEDVTFSSQHLTKIEMLKQKYVADSAVKCKSTLEENISVQANDLSVLNWSSLIQMSKMENVGPCRKHATAKPPNDSILEKNGKAMASDRELNSSTSGVEVLVGVNAPVLHENISLNSSSALTANHAESLMKEDEMDLSKCDVNMVDVEAKEKWSSPKDIKVGDGKEDFISSLCIIRNDEVQDDIVNEIGGNSGISFEIENGEMINSEERNAIIEREIVVKSSHDLDLKSELNALSSKLQIGKKDWKEENVEEVKKSNTVSSVVHTSMNEAPQQDAGYISQPVDSGNMDRGQEFAKGGAVWDIFRRQDVHRLEEYLKKYCREFRHLHCSQVEKVFHPIHDQVFYLTSYHKSKLKEEFGVEPWTFIQNLGEAVFIPAGCPHQVRNLKSCIKVALDFVSPENIQECIRLTEEFRSLPKNHKAKEDKLGVKKMCLYALRKAADDLEKLEG* 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1873 1106 Coils Coil 65 85 - -
Gso11g1873 1106 MobiDBLite consensus disorder prediction 56 72 - -
Gso11g1873 1106 ProSiteProfiles WRC domain profile. 15 60 IPR014977 -
Gso11g1873 1106 Gene3D Cupin 890 1080 - -
Gso11g1873 1106 Gene3D Cupin 472 714 - -
Gso11g1873 1106 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 7 1104 IPR045109 GO:0032454|GO:0033169
Gso11g1873 1106 MobiDBLite consensus disorder prediction 53 100 - -
Gso11g1873 1106 ProSiteProfiles Zinc finger RING-type profile. 170 215 IPR001841 -
Gso11g1873 1106 CDD cupin_RmlC-like 994 1055 - -
Gso11g1873 1106 MobiDBLite consensus disorder prediction 73 100 - -
Gso11g1873 1106 Pfam WRC 16 57 IPR014977 -
Gso11g1873 1106 Pfam JmjC domain, hydroxylase 958 1054 IPR003347 -
Gso11g1873 1106 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 168 229 IPR018866 -
Gso11g1873 1106 SUPERFAMILY Clavaminate synthase-like 479 1094 - -
Gso11g1873 1106 SMART cupin_9 585 1071 IPR003347 -
Gso11g1873 1106 ProSiteProfiles JmjC domain profile. 604 1071 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1873 Gso-Chr11 32888004 32905534 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso11g1873 JmjC 9.5e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1873 K15601 - gmx:100808936 2189.85