Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso11g1859 | ATGTCTATGGAGACCATGCGCTCCGTTCTCAAGAAATACTTTAGGTTTTCGGATTTTCGGCCTTATCAGAGAGAAGTTATTGAGAAAATTATCGAGAAAAGGGATTGTTTGGTAGTCATGGCTACTGGTAGTGGAAAGTCCTTGTGCTATCAGGTACCTCCTTTGGTTGTTAAAAAGACTGGGATAGTTGTGAGCCCTCTGATATCTTTGATGCGAGACCAGGTGATGGCTTTGAAACAACGGGGCATCAAAGCTGAATATCTTGGGAGTGCTCAGAAGGATTTCACTGTGCACTCTAAAGCTGAACATGGTCAATTTGACATTCTGTTCATGACTCCTGAGAAGGCATGCACAGTTCCTAGCAGTTTCTGGTCCAATTTACTAAAGGCTGGAATTAGTCTTTTTGCTGTTGATGAAGCCCATTGCATATCAGAATGGGGACATGATTTTAGGGTGGAATACAAGCATTTAGACAAGTTACGTGAGGTTTTGCTAGATGTTCCTTTTGTTGGTCTAACTGCAACTGCTACTGAAAAGGTTCAATATGACATCATCGGTTCCCTAAAGCTGAATTATCCTTTTGTTACGATTGGTTCAGTTGATCGCACAAATCTTTTCTATGGTGTCAAACTATTGAACCGTGGACAATCTTTTATTGACGAGCTTGTGCGAGAAATTTCAAAAGAAGTCACTAATGGTGGTTCAACTATAATTTATTGCACAACAATCAAGGATGTAGAGCAGATATTCAAGTCATTTGCAGAAGCAGGCATTGAGGCAGGGATGTACCATGGCCAGATGAATGGAAAAGCTCGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAACTGCAAGTCATGGTGGCCACCATTGCCTTTGGCATGGGCATAGATAAACCTAACATAAGACAAGTGATTCACTATGGTTGCCCTAAGAGTCTAGAGTCCTACTACCAGGAAAGTGGACGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTACTACACAAGAAGTGACTTTGCCAAGGCTGACTTTTATTGTGGAGAAGTGAAATCAGAAAAACAAAGAAAAGCTATTATGGAGTCATTGCTGGCTGCTGAACGCTATTGTGTGCTGACAACCTGCAGAAGAAAGTTCTTGCTTGAATACTTTGGGGAAAAATTCCCAGCTGATAGATGTGGGAACTGTGATAATTGCAAAATCTCAAGGAAGGAGCGTGACATGTCCAGAGAAGCATTTCTTTTAATGGCTTGCATTCATTCATGCAGGGGTGGATGGGGCCTTAATATGCCCATTGATGTCCTGCGTGGGTCTCGATCCAAGAAAATTCTTGATGTTCAGTTTGACAAGCTTCCACTTCATGGACTGGGGAAAAATTATCCAGCAAATTGGTGGAAAGCACTTGGATATCAATTGATTTCTCAAGGTTACTTGAAGGAGATTCTTAGTGGCATATACAGAACTATAAGTGTCAGCTCAAAAGGAGAGCAGTTTTTGGCCTCTTCTAGACCAGATTATAAACCTCCTTTGGTTTTGACATTGACTGCTGAAATGCTTGGTGTAGAAGATAATGGAAACACAAAAGAAGAATTCAAAACTTTATCTACTTCAGAGTCAGAAGGTTTTTCAGAGGCTGAGGGGCAGCTCTACCAAATGCTTTTGGAAGAAAGATTAAAGCTTGCAAGAAGTGTTGGAACAGCTCCATATGCTATATGTGATGATCAAACGATCAAGAAAATTGCTTTGCCAAGACCTTCTACAAAAGCAAGACTAGCAAACATTGATGGTGTGAATCAGCACCTAGTAACGAAATATGGAGATCATTTTCTTCAAGTTATTCAGAAACTGTCACAAGGATTAAACCTATCATTGGATGGGGAAGCAAGGGTCGCAACAGCAAGTTTGCAAACTAATGAAGTAAGGAAAGTATCTCTAGTAACCAACAAATCCAACAAGTTGACACCGGCAAAGTTTGAAGCTTGGAAAATGTGGCATGAAGATGGTTGTTCTATTCATGAGATTGCTAACTTTCCAGGTAGATCGGCTCCTATAAAAGAACAAATTGTTGCTGAATATCTGCTGGAAGCTGCTCAAGAAGGATTACCTTTTGATTGGGCTAGGTTCAGCGAGATGATAGGACTAACACAAGAGATCATATCAGAAATTCAGGGTGCTATTTCAAAAGTTGGATCTACAGATAAGCTGAAACCTATAAAAAATGAATTGCCAAAAGAGATAACTTATCAGCACATCAAGACTTATTTGACAATGCGAAACTGTGGAATATCCTTAGAAGCAATTCAATCTGGAAGTATCCAGACTGAGAAAGATGGTGAACCTGCACACAATGCTTCAAATTTGTCAGGTCCTACTTTAGAAACATGCCACGTGGAAAGGCATTGTGAAGACGGCATTTCTGCCATAAGTTCAACTGAAAAATGCAACTTAGAAATTAACGAGGTACCTACTCTACCCGTCAATGGTTCCGAGGTACAGAAGCTTTCATTGACCAGTGAGGGGGGATTCACAAACAAACGACACAAAGTCAGTGAAACAAAGGAAGTAAATTCAACTAAATTGAAGGCTACAGAGAGTTCTGTTGTAGAGTAG | 2616 | 0.4041 | MSMETMRSVLKKYFRFSDFRPYQREVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMRDQVMALKQRGIKAEYLGSAQKDFTVHSKAEHGQFDILFMTPEKACTVPSSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKHLDKLREVLLDVPFVGLTATATEKVQYDIIGSLKLNYPFVTIGSVDRTNLFYGVKLLNRGQSFIDELVREISKEVTNGGSTIIYCTTIKDVEQIFKSFAEAGIEAGMYHGQMNGKAREESHRLFVRDELQVMVATIAFGMGIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKADFYCGEVKSEKQRKAIMESLLAAERYCVLTTCRRKFLLEYFGEKFPADRCGNCDNCKISRKERDMSREAFLLMACIHSCRGGWGLNMPIDVLRGSRSKKILDVQFDKLPLHGLGKNYPANWWKALGYQLISQGYLKEILSGIYRTISVSSKGEQFLASSRPDYKPPLVLTLTAEMLGVEDNGNTKEEFKTLSTSESEGFSEAEGQLYQMLLEERLKLARSVGTAPYAICDDQTIKKIALPRPSTKARLANIDGVNQHLVTKYGDHFLQVIQKLSQGLNLSLDGEARVATASLQTNEVRKVSLVTNKSNKLTPAKFEAWKMWHEDGCSIHEIANFPGRSAPIKEQIVAEYLLEAAQEGLPFDWARFSEMIGLTQEIISEIQGAISKVGSTDKLKPIKNELPKEITYQHIKTYLTMRNCGISLEAIQSGSIQTEKDGEPAHNASNLSGPTLETCHVERHCEDGISAISSTEKCNLEINEVPTLPVNGSEVQKLSLTSEGGFTNKRHKVSETKEVNSTKLKATESSVVE* | 872 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso11g1859 | 871 | Pfam | HRDC domain | 550 | 615 | IPR002121 | GO:0003676 | |
Gso11g1859 | 871 | MobiDBLite | consensus disorder prediction | 851 | 871 | - | - | |
Gso11g1859 | 871 | SUPERFAMILY | "Winged helix" DNA-binding domain | 400 | 506 | IPR036390 | - | |
Gso11g1859 | 871 | Pfam | RecQ zinc-binding | 340 | 402 | IPR032284 | - | |
Gso11g1859 | 871 | SMART | hrdc7 | 545 | 625 | IPR002121 | GO:0003676 | |
Gso11g1859 | 871 | SMART | RQC_2 | 409 | 513 | IPR018982 | GO:0006260|GO:0006281|GO:0043138 | |
Gso11g1859 | 871 | PANTHER | WERNER SYNDROME ATP-DEPENDENT HELICASE | 3 | 688 | - | - | |
Gso11g1859 | 871 | ProSiteProfiles | HRDC domain profile. | 545 | 625 | IPR002121 | GO:0003676 | |
Gso11g1859 | 871 | TIGRFAM | recQ_fam: ATP-dependent DNA helicase, RecQ family | 8 | 460 | IPR004589 | GO:0004386|GO:0006310 | |
Gso11g1859 | 871 | Pfam | DEAD/DEAH box helicase | 21 | 180 | IPR011545 | GO:0003676|GO:0005524 | |
Gso11g1859 | 871 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 218 | 372 | IPR001650 | - | |
Gso11g1859 | 871 | SMART | helicmild6 | 247 | 328 | IPR001650 | - | |
Gso11g1859 | 871 | CDD | DEXHc_RecQ | 7 | 201 | - | - | |
Gso11g1859 | 871 | Gene3D | - | 1 | 200 | IPR027417 | - | |
Gso11g1859 | 871 | SUPERFAMILY | HRDC-like | 544 | 620 | IPR010997 | GO:0000166|GO:0044237 | |
Gso11g1859 | 871 | CDD | SF2_C_RecQ | 202 | 337 | - | - | |
Gso11g1859 | 871 | Gene3D | - | 404 | 525 | IPR036388 | - | |
Gso11g1859 | 871 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 3 | 688 | - | - | |
Gso11g1859 | 871 | Gene3D | HRDC domain | 543 | 624 | IPR044876 | - | |
Gso11g1859 | 871 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 59 | 342 | IPR027417 | - | |
Gso11g1859 | 871 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 27 | 194 | IPR014001 | - | |
Gso11g1859 | 871 | Pfam | Helix-turn-helix domain | 661 | 757 | IPR029491 | - | |
Gso11g1859 | 871 | Gene3D | - | 202 | 403 | IPR027417 | - | |
Gso11g1859 | 871 | SMART | ultradead3 | 15 | 210 | IPR014001 | - | |
Gso11g1859 | 871 | Pfam | RQC domain | 405 | 503 | IPR018982 | GO:0006260|GO:0006281|GO:0043138 | |
Gso11g1859 | 871 | Pfam | Helicase conserved C-terminal domain | 221 | 327 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso11g1859 | Gso-Chr11 | 32748388 | 32769985 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso11g1859 | 237 | 344 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 27.778 | 1.63e-06 | 49.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso11g1859 | K03654 | - | gmx:100804673 | 1739.55 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso11g1859 | 11 | 32748388 | 32769985 | Gso11g1859 | 11 | 32748388 | 32769985 | ECH |