Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1859 ATGTCTATGGAGACCATGCGCTCCGTTCTCAAGAAATACTTTAGGTTTTCGGATTTTCGGCCTTATCAGAGAGAAGTTATTGAGAAAATTATCGAGAAAAGGGATTGTTTGGTAGTCATGGCTACTGGTAGTGGAAAGTCCTTGTGCTATCAGGTACCTCCTTTGGTTGTTAAAAAGACTGGGATAGTTGTGAGCCCTCTGATATCTTTGATGCGAGACCAGGTGATGGCTTTGAAACAACGGGGCATCAAAGCTGAATATCTTGGGAGTGCTCAGAAGGATTTCACTGTGCACTCTAAAGCTGAACATGGTCAATTTGACATTCTGTTCATGACTCCTGAGAAGGCATGCACAGTTCCTAGCAGTTTCTGGTCCAATTTACTAAAGGCTGGAATTAGTCTTTTTGCTGTTGATGAAGCCCATTGCATATCAGAATGGGGACATGATTTTAGGGTGGAATACAAGCATTTAGACAAGTTACGTGAGGTTTTGCTAGATGTTCCTTTTGTTGGTCTAACTGCAACTGCTACTGAAAAGGTTCAATATGACATCATCGGTTCCCTAAAGCTGAATTATCCTTTTGTTACGATTGGTTCAGTTGATCGCACAAATCTTTTCTATGGTGTCAAACTATTGAACCGTGGACAATCTTTTATTGACGAGCTTGTGCGAGAAATTTCAAAAGAAGTCACTAATGGTGGTTCAACTATAATTTATTGCACAACAATCAAGGATGTAGAGCAGATATTCAAGTCATTTGCAGAAGCAGGCATTGAGGCAGGGATGTACCATGGCCAGATGAATGGAAAAGCTCGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAACTGCAAGTCATGGTGGCCACCATTGCCTTTGGCATGGGCATAGATAAACCTAACATAAGACAAGTGATTCACTATGGTTGCCCTAAGAGTCTAGAGTCCTACTACCAGGAAAGTGGACGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTACTACACAAGAAGTGACTTTGCCAAGGCTGACTTTTATTGTGGAGAAGTGAAATCAGAAAAACAAAGAAAAGCTATTATGGAGTCATTGCTGGCTGCTGAACGCTATTGTGTGCTGACAACCTGCAGAAGAAAGTTCTTGCTTGAATACTTTGGGGAAAAATTCCCAGCTGATAGATGTGGGAACTGTGATAATTGCAAAATCTCAAGGAAGGAGCGTGACATGTCCAGAGAAGCATTTCTTTTAATGGCTTGCATTCATTCATGCAGGGGTGGATGGGGCCTTAATATGCCCATTGATGTCCTGCGTGGGTCTCGATCCAAGAAAATTCTTGATGTTCAGTTTGACAAGCTTCCACTTCATGGACTGGGGAAAAATTATCCAGCAAATTGGTGGAAAGCACTTGGATATCAATTGATTTCTCAAGGTTACTTGAAGGAGATTCTTAGTGGCATATACAGAACTATAAGTGTCAGCTCAAAAGGAGAGCAGTTTTTGGCCTCTTCTAGACCAGATTATAAACCTCCTTTGGTTTTGACATTGACTGCTGAAATGCTTGGTGTAGAAGATAATGGAAACACAAAAGAAGAATTCAAAACTTTATCTACTTCAGAGTCAGAAGGTTTTTCAGAGGCTGAGGGGCAGCTCTACCAAATGCTTTTGGAAGAAAGATTAAAGCTTGCAAGAAGTGTTGGAACAGCTCCATATGCTATATGTGATGATCAAACGATCAAGAAAATTGCTTTGCCAAGACCTTCTACAAAAGCAAGACTAGCAAACATTGATGGTGTGAATCAGCACCTAGTAACGAAATATGGAGATCATTTTCTTCAAGTTATTCAGAAACTGTCACAAGGATTAAACCTATCATTGGATGGGGAAGCAAGGGTCGCAACAGCAAGTTTGCAAACTAATGAAGTAAGGAAAGTATCTCTAGTAACCAACAAATCCAACAAGTTGACACCGGCAAAGTTTGAAGCTTGGAAAATGTGGCATGAAGATGGTTGTTCTATTCATGAGATTGCTAACTTTCCAGGTAGATCGGCTCCTATAAAAGAACAAATTGTTGCTGAATATCTGCTGGAAGCTGCTCAAGAAGGATTACCTTTTGATTGGGCTAGGTTCAGCGAGATGATAGGACTAACACAAGAGATCATATCAGAAATTCAGGGTGCTATTTCAAAAGTTGGATCTACAGATAAGCTGAAACCTATAAAAAATGAATTGCCAAAAGAGATAACTTATCAGCACATCAAGACTTATTTGACAATGCGAAACTGTGGAATATCCTTAGAAGCAATTCAATCTGGAAGTATCCAGACTGAGAAAGATGGTGAACCTGCACACAATGCTTCAAATTTGTCAGGTCCTACTTTAGAAACATGCCACGTGGAAAGGCATTGTGAAGACGGCATTTCTGCCATAAGTTCAACTGAAAAATGCAACTTAGAAATTAACGAGGTACCTACTCTACCCGTCAATGGTTCCGAGGTACAGAAGCTTTCATTGACCAGTGAGGGGGGATTCACAAACAAACGACACAAAGTCAGTGAAACAAAGGAAGTAAATTCAACTAAATTGAAGGCTACAGAGAGTTCTGTTGTAGAGTAG 2616 0.4041 MSMETMRSVLKKYFRFSDFRPYQREVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMRDQVMALKQRGIKAEYLGSAQKDFTVHSKAEHGQFDILFMTPEKACTVPSSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKHLDKLREVLLDVPFVGLTATATEKVQYDIIGSLKLNYPFVTIGSVDRTNLFYGVKLLNRGQSFIDELVREISKEVTNGGSTIIYCTTIKDVEQIFKSFAEAGIEAGMYHGQMNGKAREESHRLFVRDELQVMVATIAFGMGIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKADFYCGEVKSEKQRKAIMESLLAAERYCVLTTCRRKFLLEYFGEKFPADRCGNCDNCKISRKERDMSREAFLLMACIHSCRGGWGLNMPIDVLRGSRSKKILDVQFDKLPLHGLGKNYPANWWKALGYQLISQGYLKEILSGIYRTISVSSKGEQFLASSRPDYKPPLVLTLTAEMLGVEDNGNTKEEFKTLSTSESEGFSEAEGQLYQMLLEERLKLARSVGTAPYAICDDQTIKKIALPRPSTKARLANIDGVNQHLVTKYGDHFLQVIQKLSQGLNLSLDGEARVATASLQTNEVRKVSLVTNKSNKLTPAKFEAWKMWHEDGCSIHEIANFPGRSAPIKEQIVAEYLLEAAQEGLPFDWARFSEMIGLTQEIISEIQGAISKVGSTDKLKPIKNELPKEITYQHIKTYLTMRNCGISLEAIQSGSIQTEKDGEPAHNASNLSGPTLETCHVERHCEDGISAISSTEKCNLEINEVPTLPVNGSEVQKLSLTSEGGFTNKRHKVSETKEVNSTKLKATESSVVE* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1859 871 Pfam HRDC domain 550 615 IPR002121 GO:0003676
Gso11g1859 871 MobiDBLite consensus disorder prediction 851 871 - -
Gso11g1859 871 SUPERFAMILY "Winged helix" DNA-binding domain 400 506 IPR036390 -
Gso11g1859 871 Pfam RecQ zinc-binding 340 402 IPR032284 -
Gso11g1859 871 SMART hrdc7 545 625 IPR002121 GO:0003676
Gso11g1859 871 SMART RQC_2 409 513 IPR018982 GO:0006260|GO:0006281|GO:0043138
Gso11g1859 871 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 3 688 - -
Gso11g1859 871 ProSiteProfiles HRDC domain profile. 545 625 IPR002121 GO:0003676
Gso11g1859 871 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 8 460 IPR004589 GO:0004386|GO:0006310
Gso11g1859 871 Pfam DEAD/DEAH box helicase 21 180 IPR011545 GO:0003676|GO:0005524
Gso11g1859 871 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 218 372 IPR001650 -
Gso11g1859 871 SMART helicmild6 247 328 IPR001650 -
Gso11g1859 871 CDD DEXHc_RecQ 7 201 - -
Gso11g1859 871 Gene3D - 1 200 IPR027417 -
Gso11g1859 871 SUPERFAMILY HRDC-like 544 620 IPR010997 GO:0000166|GO:0044237
Gso11g1859 871 CDD SF2_C_RecQ 202 337 - -
Gso11g1859 871 Gene3D - 404 525 IPR036388 -
Gso11g1859 871 PANTHER DNA HELICASE RECQ FAMILY MEMBER 3 688 - -
Gso11g1859 871 Gene3D HRDC domain 543 624 IPR044876 -
Gso11g1859 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 342 IPR027417 -
Gso11g1859 871 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 27 194 IPR014001 -
Gso11g1859 871 Pfam Helix-turn-helix domain 661 757 IPR029491 -
Gso11g1859 871 Gene3D - 202 403 IPR027417 -
Gso11g1859 871 SMART ultradead3 15 210 IPR014001 -
Gso11g1859 871 Pfam RQC domain 405 503 IPR018982 GO:0006260|GO:0006281|GO:0043138
Gso11g1859 871 Pfam Helicase conserved C-terminal domain 221 327 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1859 Gso-Chr11 32748388 32769985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1859 237 344 Eukaryotic Initiation Factors Gene Family AT3G19760 27.778 1.63e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1859 K03654 - gmx:100804673 1739.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1859 11 32748388 32769985 Gso11g1859 11 32748388 32769985 ECH