Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1845 ATGCATCTTTCAAAGAGTTTCAAGCATGGAGTTGTTTTCCTCTTGTGGTTCTGCTGCTATTTGCTGCATGCTGCTGGGCAGAATAACATCACTGATCCCGTTGAAGTTGACGCATTGAGAGCCATTAAGAGGCGTTTGATTGATCCTAATGGAAATTTGAGCAATTGGGAAGATAGAGACCCGTGTACATCAAGGTGGAAAGGAGTTTTGTGCTTCAATGAAACAAAAGAGGATGGCTATCTGCATGTTGAAGAATTGCAATTACTGAGATTGAACTTGTTCGGAACTTTGGCACCAGATCTTGGCAAATTAACTTATATGAAAAGATTGAACTTTATGTGGAACAACATAAGTGGGAGTATTCCAAAGGAAGTTGGCAATATCACATCTTTGGAACTCTTGCTTCTGAATGGAAATAACTTAACAGGATCACTACCAGAGGAGATTGGCTATCTTCCAAACCTGGATAGAATACAAATTGATCAGAACCAAATATCCGGACCTATACCTACGTCATTTGCAAACCTGAACAAGACAAAGCACTTCCACATGAACAATAATTCACTTAGTGGACAAATCCCACCGGAGCTTTCCCGATTACCAAAGCTTGTTCACCTTCTTCTCGACAACAACAACTTATCTGGATATCTTCCCCGTGAGCTGGCTGATATGCCAAGCTTACTTATCATTCAACTTGATAACAATAACTTTGAGGGAAATAGCATTCCTGATACATATGCCAACATGTCAAAGTTGTTGAAGATGAGCCTTAGGAATTGCAATTTGCGAGGACCACTTCCTGATTTAAGAAGGATACCTCACCTTCTTTATCTTGACCTCAGTTTCAACCAGTTGAATGGATCGATTCCTCCGAATAAGCTTTCTGAAAATATCACAACCATTGATTTATCAAACAACCTCCTTACTGGAAATATTCCATCCTACTTTGCTGATCTTCCACGTCTTCAGAAATTGTCACTTGCAAACAATTCATTGGATGGCACTGTTTCTTCCTCCATTTGGCAGAATAAGACTTTAAATGGAACAGAAAAATTTTTCTTGGAGTTGGAAAATAATAATCTTACAACCATATCAGGCAGTATTGATCTTCCTCCAAATGTCACAGTTGGGCTTAATGGAAATCCCCTTTGCTCAAATATAACCCTGATTCAGTTCTGTGGATCTGAAGCTGCTACTGTAACAAATGGCTCATTAACAACAAATTTCAGTTCCTGTCCCCCTCAAGGATGCCCTCCTCCTTTTGAATACACTGTGGATTGTTTCTGTGCGCTTCCATTGATTGTTTTCTATCGGTTGAAAAGTCCTGGATTTACAAACTTTCTTCCATATTTGAATGGATTTAAGGACTACATGACTCATGGTCTTGAAATATCTTTTGATCAGCTAGAATATGATTTTTATTGGCAAGTAGGACCTCGACTGAAAATGGATTTGAAGTTTTTTCCTCCATATCTTAATAACACTAGTAATCATACTTTCAATGAAAGCGAGCTCCTACGGATCAAAAGCAAGTTCACAGGATGGCTAATTCCAGACAATGATACGTTTGGGCCTTATGAACTGATTGGCTTCAATCTTTTGGGTTCTTACCAGGATGTGATTCCCACGAGATCTGAATCACAGAATATACGTACGGGTGTGCTGGTTGGCATAGTCATAGGGGCAATTGCCTGTGCAGTGACGTTATCTGCAATTGTTACCATTCTTATTTTGAGAATAAAATTGAGAGATTATCATGCCGTTTCCAAGCAACGTCATGCATCTAAAATCTCTATAAAAATTGATGGTGTAAGGGCCTTTACTTATGGAGAATTGTCCTTTGCCACAAACAATTTCAGCATCTCTGCTCAAGTTGGACAAGGGGGCTATGGGAAGGTTTATAAAGGGGTTCTTTCTGATGGCACAGTTGTTGCCATAAAACGTGCACAAGAGGGATCCCTGCAGGGTGAGAAGGAGTTCCTTACAGAAATATCATTACTATCAAGGTTACATCATCGCAACCTCGTGTCTCTGATTGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGTCTAATGGCACATTGAGGGATCACCTTTCTGTTACAGCTAAAGATCCTCTGACTTTTGCAATGAGATTGAAGATCGCGCTAGGGGCAGCTAAAGGTCTTATGTATCTACACACAGAAGCTGATCCTCCAATATTTCACCGAGATGTAAAGGCCAGCAACATATTATTGGACTCTAAGTTTTCCGCGAAAGTGGCTGATTTTGGACTCTCACGGCTTGCCCCAGTTCCAGACATGGAAGGAGTTGTGCCTGGTCATGTATCTACAGTGGTAAAGGGGACCCCGGGTTACCTTGATCCAGAGTACTTCTTAACTCATAAGTTGACTGACAAGAGTGATGTTTATAGTCTTGGTGTCGTATTTCTGGAACTTTTGACAGGGATGCATCCTATCTCACATGGCAAAAATATTGTTAGAGAGGTGAACGTTGCATACCAATCTGGCGTGATATTTTCAATTATCGATGGACGAATGGGGTCTTATCCATCTGAGCATGTGGAGAAATTTTTGACTTTGGCCATGAAGTGTTGCGAAGATGAGCCAGAGGCACGGCCTAGTATGACAGAAGTGGTAAGAGAGCTTGAGAACATATGGTCTACAATGCCGGAATCAGATACCAAGAGAGCTGAATTTATATCCAGTGATTCTGGCAAAGCAGACAGTCACAGTACACCATCTTCATCTTCTGCCTCTGCTTCTGTTATGAAGACTCCTTTTGTATCAGGAGATGTGTCAGGTAGTGACCTTGTTAGTGGAGTGATACCAAGCATCAAGCCAAGATAG 2865 0.4077 MHLSKSFKHGVVFLLWFCCYLLHAAGQNNITDPVEVDALRAIKRRLIDPNGNLSNWEDRDPCTSRWKGVLCFNETKEDGYLHVEELQLLRLNLFGTLAPDLGKLTYMKRLNFMWNNISGSIPKEVGNITSLELLLLNGNNLTGSLPEEIGYLPNLDRIQIDQNQISGPIPTSFANLNKTKHFHMNNNSLSGQIPPELSRLPKLVHLLLDNNNLSGYLPRELADMPSLLIIQLDNNNFEGNSIPDTYANMSKLLKMSLRNCNLRGPLPDLRRIPHLLYLDLSFNQLNGSIPPNKLSENITTIDLSNNLLTGNIPSYFADLPRLQKLSLANNSLDGTVSSSIWQNKTLNGTEKFFLELENNNLTTISGSIDLPPNVTVGLNGNPLCSNITLIQFCGSEAATVTNGSLTTNFSSCPPQGCPPPFEYTVDCFCALPLIVFYRLKSPGFTNFLPYLNGFKDYMTHGLEISFDQLEYDFYWQVGPRLKMDLKFFPPYLNNTSNHTFNESELLRIKSKFTGWLIPDNDTFGPYELIGFNLLGSYQDVIPTRSESQNIRTGVLVGIVIGAIACAVTLSAIVTILILRIKLRDYHAVSKQRHASKISIKIDGVRAFTYGELSFATNNFSISAQVGQGGYGKVYKGVLSDGTVVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMSNGTLRDHLSVTAKDPLTFAMRLKIALGAAKGLMYLHTEADPPIFHRDVKASNILLDSKFSAKVADFGLSRLAPVPDMEGVVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVNVAYQSGVIFSIIDGRMGSYPSEHVEKFLTLAMKCCEDEPEARPSMTEVVRELENIWSTMPESDTKRAEFISSDSGKADSHSTPSSSSASASVMKTPFVSGDVSGSDLVSGVIPSIKPR* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1845 954 Gene3D Ribonuclease Inhibitor 34 186 IPR032675 -
Gso11g1845 954 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 11 924 - -
Gso11g1845 954 Gene3D Ribonuclease Inhibitor 295 394 IPR032675 -
Gso11g1845 954 SUPERFAMILY L domain-like 48 393 - -
Gso11g1845 954 ProSitePatterns Serine/Threonine protein kinases active-site signature. 739 751 IPR008271 GO:0004672|GO:0006468
Gso11g1845 954 MobiDBLite consensus disorder prediction 910 934 - -
Gso11g1845 954 Gene3D Phosphorylase Kinase; domain 1 588 694 - -
Gso11g1845 954 CDD STKc_IRAK 625 891 - -
Gso11g1845 954 Pfam Protein kinase domain 621 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1845 954 MobiDBLite consensus disorder prediction 900 954 - -
Gso11g1845 954 ProSiteProfiles Protein kinase domain profile. 619 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1845 954 ProSitePatterns Protein kinases ATP-binding region signature. 625 647 IPR017441 GO:0005524
Gso11g1845 954 SMART LRR_typ_2 224 248 IPR003591 -
Gso11g1845 954 SMART LRR_typ_2 200 223 IPR003591 -
Gso11g1845 954 SMART LRR_typ_2 319 343 IPR003591 -
Gso11g1845 954 SMART LRR_typ_2 272 296 IPR003591 -
Gso11g1845 954 SMART LRR_typ_2 128 152 IPR003591 -
Gso11g1845 954 Pfam Leucine rich repeat 153 213 IPR001611 GO:0005515
Gso11g1845 954 Gene3D Ribonuclease Inhibitor 187 294 IPR032675 -
Gso11g1845 954 SMART serkin_6 619 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1845 954 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Gso11g1845 954 Gene3D Transferase(Phosphotransferase) domain 1 695 913 - -
Gso11g1845 954 SUPERFAMILY Protein kinase-like (PK-like) 604 908 IPR011009 -
Gso11g1845 954 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 11 924 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1845 Gso-Chr11 32441575 32460319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1845 12 901 Receptor kinase-like Gene Family AT5G01950 57.364 0.0 984
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Gso11g1845 Pkinase 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1845 - - gmx:100799888 1874.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1845 11 32441575 32460319 Gso11g1845 11 32441575 32460319 ECH