Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1840 ATGCTTCTGAACCTCTCCCATGCTTCCTTTCAGGAAAATATGAAGGCCGGAAAAGTTTACTCCAAATTTAATTGTCGATATCTTATTCCTTTCAGTAAACAACTCCCCATGAAGTTCTGTTCTACTTCAGTGGCTTCTTTTCTTTTTGTCATAGTTATTTTTTTCCCTCTAGCTATTGCTGATCTAAGTTCAGATAAGCAAGCCCTTCTTAATTTTGCTAATGCTGTCCCCCACCGTCGAAACCTTATGTGGAATCCATCCACCTCAGTCTGTTCATCTTGGGTAGGCATCACTTGCAATGAAAATAGAACTCGTGTTGTTAAAGTCCGGCTCCCTGGAGTTGGACTAGTTGGCACCATCCCATCCAATACACTTGGCAAGCTTGATGCTGTGAAAATTATTAGCCTTCGCTCCAACCTACTCAGTGGAAATCTTCCTGCTGACATTGGTTCTCTTCCTTCTCTTCAGTATCTCTACCTCCAGCATAATAACCTTTCTGGTGATATACCTGCCTCATTGTCTCCCCAACTCATTGTACTTGATTTGTCATATAACTCCTTCACTGGTGTTATTCCGAAGACATTTCAAAATATGTCAGTATTAACTAGTTTGAATCTCCAGAACAACTCTCTATCCGGACAGATACCTAATCTTAATGTCACTCTGCTCAAGCTTTTGAATTTAAGCTACAACCATTTGAATGGCTCAATTCCCAAAGCTCTTGAGATTTTTCCAAATTCTTCCTTTGAAGGAAACTCTCTCTTATGTGGACCACCTTTAAAGCCATGCTCTGCAGTTCCCCCTACACCTTCTCCTGCCTCGACTCCGCCCCCATCAACTACTGGAAGACAAAGTTCAAAAAACAAGTTGAGTAAAATAGCTATCATTGTTATTGCTGTTGGAGGAGCTGTGGTGCTATTCTTTATTGCTCTTGTTTTTGTTATTTGCTGTTTAAAGAAGGAAGATAACAGAGGCTCCAATGTAATTAAAGGGAAAGGTCCTAGTGGTGGTAGGGGTGAGAAACCAAAAGAAGAGTTTGGAAGTGGGGTTCAAGAACCCGAGAAGAACAAGTTGGTTTTCTTTGAGGGAAGTTCTTATAATTTTGATCTTGAGGATTTGCTGAGAGCTTCGGCTGAAGTTCTGGGGAAGGGTAGTTATGGTACTGCATATAAGGCCATACTGGAGGAGTCAATGACTGTTGTGGTGAAAAGATTGAAAGAAGTTGTGGTAGGCAAGAAGGACTTTGAACAGCAGATGGAGATTATGGGAAGAGTTGGACAACACACAAATGTTGTGCCACTTCGCGCTTATTATTATTCAAAAGATGAAAAGCTTTTGGTATATGACTATGTCCCAGGTGGCAACCTACACACACTCTTGCATGGTGGTAGGACAGGTGGAAGAACTCCATTAGACTGGGACTCCCGAATAAAAATATCCCTTGGAACAGCCAAAGGTCTTGCCCACATTCATTCTGTTGGTGGTCCCAAATTCACACATGGAAATATCAAGTCCTCAAATGTCCTCCTCAACCAAGATAATGATGGCTGCATTTCTGATTTTGGCCTTGCGCCCCTTATGAATGTTCCTGCTACCCCTTCTAGAGCTGCAGGTTATCGTGCTCCTGAGGTGATTGAAACCCGTAAACACTCTCATAAATCAGATGTGTACAGTTTTGGTGTCCTCCTTCTTGAGATGCTTACCGGGAAGGCTCCTCTCCAATCTCCAGGACGTGATGATATGGTTGATCTCCCTAGGTGGGTTCAGTCTGTTGTTAGGGAAGAGTGGACGGCCGAAGTTTTTGACGTCGAGCTAATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAAATGTTGCAAATTGCCATGGCTTGTGTGGCAAAGATGCCAGATATGAGACCTAGCATGGATGAAGCAGTGAGAATGATCGAAGAGATCCGGCAATCTGACTCAGAGAACCGACCATCTTCTGAAGAAAATAAATCTAAGGACTCAAATGTTCAGACTCCATAG 2013 0.4257 MLLNLSHASFQENMKAGKVYSKFNCRYLIPFSKQLPMKFCSTSVASFLFVIVIFFPLAIADLSSDKQALLNFANAVPHRRNLMWNPSTSVCSSWVGITCNENRTRVVKVRLPGVGLVGTIPSNTLGKLDAVKIISLRSNLLSGNLPADIGSLPSLQYLYLQHNNLSGDIPASLSPQLIVLDLSYNSFTGVIPKTFQNMSVLTSLNLQNNSLSGQIPNLNVTLLKLLNLSYNHLNGSIPKALEIFPNSSFEGNSLLCGPPLKPCSAVPPTPSPASTPPPSTTGRQSSKNKLSKIAIIVIAVGGAVVLFFIALVFVICCLKKEDNRGSNVIKGKGPSGGRGEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESMTVVVKRLKEVVVGKKDFEQQMEIMGRVGQHTNVVPLRAYYYSKDEKLLVYDYVPGGNLHTLLHGGRTGGRTPLDWDSRIKISLGTAKGLAHIHSVGGPKFTHGNIKSSNVLLNQDNDGCISDFGLAPLMNVPATPSRAAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKMPDMRPSMDEAVRMIEEIRQSDSENRPSSEENKSKDSNVQTP* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1840 670 Gene3D Ribonuclease Inhibitor 63 176 IPR032675 -
Gso11g1840 670 MobiDBLite consensus disorder prediction 265 285 - -
Gso11g1840 670 SUPERFAMILY Protein kinase-like (PK-like) 379 653 IPR011009 -
Gso11g1840 670 ProSitePatterns Protein kinases ATP-binding region signature. 381 412 IPR017441 GO:0005524
Gso11g1840 670 MobiDBLite consensus disorder prediction 336 350 - -
Gso11g1840 670 MobiDBLite consensus disorder prediction 644 661 - -
Gso11g1840 670 Gene3D Transferase(Phosphotransferase) domain 1 451 669 - -
Gso11g1840 670 Pfam Leucine rich repeat 119 165 IPR001611 GO:0005515
Gso11g1840 670 Pfam Leucine rich repeat 175 211 IPR001611 GO:0005515
Gso11g1840 670 Gene3D Phosphorylase Kinase; domain 1 343 450 - -
Gso11g1840 670 ProSiteProfiles Protein kinase domain profile. 375 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1840 670 Gene3D Ribonuclease Inhibitor 177 264 IPR032675 -
Gso11g1840 670 Pfam Protein kinase domain 378 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1840 670 MobiDBLite consensus disorder prediction 644 670 - -
Gso11g1840 670 Pfam Leucine rich repeat N-terminal domain 63 100 IPR013210 -
Gso11g1840 670 CDD STKc_IRAK 381 646 - -
Gso11g1840 670 SUPERFAMILY L domain-like 64 263 - -
Gso11g1840 670 MobiDBLite consensus disorder prediction 327 350 - -
Gso11g1840 670 PANTHER OS05G0588300 PROTEIN 25 670 - -
Gso11g1840 670 PANTHER LRR RECEPTOR-LIKE KINASE 25 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1840 Gso-Chr11 32299522 32304100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1840 27 668 Receptor kinase-like Gene Family AT5G58300 67.488 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso11g1840 Pkinase 2.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1840 - - gmx:100796171 1241.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1840 11 32299522 32304100 Gso11g1840 11 32299522 32304100 ECH