Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1836 ATGAGTGACACACACCAACCTTTCATGTCCGTACAACCACCCATGAAGCTCCACAACCACCCATTTAACCCACAAGCCTCAAGCTCAAATTTTGACGGCGACCCACCATGCAAAACCGCCGGAAAAACAAAACCACCTCACAAGAAGCTCCTCCGGGTCATTCTCACCGACCACGACGCCACCGATTCTGACTCCTCCGGCGACGACGAAGACCCAAAAAACACAAGAAAACACAAAAAGGTGAAAAGACAAATTACCCACATCACCATAAACCTTCCCTTTTTCTCAAAATCCCCAACTCCAACATCAACACCTTCTTCTTCTTCGCTTGACCCGACCCGTTCGACCCGACCCAAGAAACGACTCGGCGTCCCTCGCCGCCGGAACAAGTTCCGCGGCGTCCGGCAGCGACCGTGGGGACGGTGGACGGCAGAAATCCGTGACCCGACTCAGAGAAAACGGGTCTGGCTCGGAACCTTCGACACGGCGGAGGAAGCCGCCGCCGTGTACGACGAGGCCGCGGTGAAGCTCAAGGGCCCTAACGCCGTCACCAACTTCCCCCTCTCCGCCGCCGAAAACACGGAACATGATACCCCTCCGCCGGAGACGGTGTTCTCCGGCGAAGGTCTTTCATCTCCGACGTCCGTTCTCACTTACTGCGACGGAGACTCGACGCCGTTCGACGGTTTTCGTTACGGCGAGGTCGACGCGTTCGGGTTTGAGTTTGACATCGACGCGCCGTTTAGTTTAACGGCCGTTAACTTAGGGGTGCTGAGTCAGCGGTTCGGGAAGGAAGAGTTTGGCGAGTTTGACCCGAACGAGTTCTTGACGTGGCCGAGTTAA 843 0.5635 MSDTHQPFMSVQPPMKLHNHPFNPQASSSNFDGDPPCKTAGKTKPPHKKLLRVILTDHDATDSDSSGDDEDPKNTRKHKKVKRQITHITINLPFFSKSPTPTSTPSSSSLDPTRSTRPKKRLGVPRRRNKFRGVRQRPWGRWTAEIRDPTQRKRVWLGTFDTAEEAAAVYDEAAVKLKGPNAVTNFPLSAAENTEHDTPPPETVFSGEGLSSPTSVLTYCDGDSTPFDGFRYGEVDAFGFEFDIDAPFSLTAVNLGVLSQRFGKEEFGEFDPNEFLTWPS* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1836 280 Gene3D AP2/ERF domain 129 189 IPR036955 GO:0003700|GO:0006355
Gso11g1836 280 ProSiteProfiles AP2/ERF domain profile. 130 187 IPR001471 GO:0003700|GO:0006355
Gso11g1836 280 MobiDBLite consensus disorder prediction 89 113 - -
Gso11g1836 280 SUPERFAMILY DNA-binding domain 130 189 IPR016177 GO:0003677
Gso11g1836 280 PIRSF PTI6 23 280 IPR017392 GO:0003700
Gso11g1836 280 MobiDBLite consensus disorder prediction 50 76 - -
Gso11g1836 280 CDD AP2 130 189 IPR001471 GO:0003700|GO:0006355
Gso11g1836 280 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 44 276 - -
Gso11g1836 280 PRINTS Ethylene responsive element binding protein signature 131 142 IPR001471 GO:0003700|GO:0006355
Gso11g1836 280 PRINTS Ethylene responsive element binding protein signature 153 169 IPR001471 GO:0003700|GO:0006355
Gso11g1836 280 Pfam AP2 domain 130 179 IPR001471 GO:0003700|GO:0006355
Gso11g1836 280 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 44 276 - -
Gso11g1836 280 MobiDBLite consensus disorder prediction 1 130 - -
Gso11g1836 280 SMART rav1_2 130 193 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1836 Gso-Chr11 32279092 32280699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1836 49 219 AP2-EREBP Transcription Factor Family AT4G27950 44.041 2.30e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso11g1836 AP2 6.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1836 K13434 - gmx:100794593 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1836 11 32279092 32280699 Gso11g1836 11 32279092 32280699 ECH