Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso11g1834 | ATGTCGTATGTGCCTCCGCACCTCAGAAACCCGAGTTCCACCACCGTCGCCACCGCCAGAACCCCCTCCGTAACCCTAGACAACCACCACCACCACCACCACAAGCTCGCATTCGCCTCCAACACCACCACCAATTGCTCTCCATCTCTCTCCTCCTTCCACAACAATGCCTCTCGCCGGAGCTCCGCCGCGCCTCCCTCGCCGCGGATTCTCGCCAACCCCGACACCATCTTCCCCCAATGGCAACCCTCCGAACGCGTTTCCCGCATGACTCCGGAACAGATTGAAGAGGTCCGGTCCAGGCTTAATCTTGATGTTGCTGTCGCATCTGACTCTCCTCCTGCACCTGCTCCAATAGAATCGTTTACTGATATGTGTTTGCATCCGAGTATCATGAAGGACATTGCTTACCATGAATACACCAGGCCAACTTCGATCCAGGCACAGGCCATGCCAATTGCTCTCAGTGGAAGGGATCTATTGGGTTGTGCTGAAACCGGTAGTGGAAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTGGCCCAACATCCCATTCGGCGCAATGATGGTCCCCTGGCATTAGTTTTGGCTCCTACGAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCTCTTGAGTCATTAAAAACTGCCATAGTTGTGGGCGGAACCAACATTGAAAAGCAGAGGTCTGAACTAAGAGCTGGAGTTGAAATAGCAGTTGCCACCCCTGGAAGATTCATTGATCATTTACAACAAGGCAACACTTCCCTCTCCAGAATTTCTTTTGTTGTTCTAGATGAGGCAGATAGAATGCTTGATATGGGTTTTGAACCACAGATAAGAGAGGTAATGAGAAATCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCGACTATGCCTGTGGAGATTGAAGAATTATCAAAAGAGTACTTAGCTAACCCAGTGCAAGTGAAGGTGGGGAAAGTGAGTAGCCCAACAACTAATGTTTCACAAACTCTTGTGAAAATTTCTGAAAATGAGAAGATTGATCGGCTTCTAGATTTGCTTGTAGAGGAGGCATCACAGGCCGAAAAATGTGGTCATCCATGTCCATTAACAATTGTGTTTGTTGAGAGGAAGACAAGGTGTGATGAAGTTGCTGAAGCATTGGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGTCGCAGTCAGAGTGAAAGAGAAGCTGCCTTGCATGATTTTCGGAGTGGCTCCACCAACATTTTGGTTGCCACTGATGTCGCGTCTCGTGGCTTGGATGTCACAGGAGTGTCACATGTCATTAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCGGGATCAACTGGCTTAGCTACTTCATTTTACACTGATCGCGACATGTTCCTCGTGGCAAATATAAGGAAAGCAATAGCTGATGCAGAATCTGGGAACACACTGACATTTGCAACCGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACAAAAAGAGGCAAATATTGCTTTATCCAAACAGTTAGGATTGGGAGCTGCTTCAATGAACATTGAAGATAAATATAAATTCATGATTACTGCCACAAACACTAAAAAAGAGGGAGCAGCAGATAGTGCCTGGGATGATTAA | 1698 | 0.4682 | MSYVPPHLRNPSSTTVATARTPSVTLDNHHHHHHKLAFASNTTTNCSPSLSSFHNNASRRSSAAPPSPRILANPDTIFPQWQPSERVSRMTPEQIEEVRSRLNLDVAVASDSPPAPAPIESFTDMCLHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQHPIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIEELSKEYLANPVQVKVGKVSSPTTNVSQTLVKISENEKIDRLLDLLVEEASQAEKCGHPCPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLVANIRKAIADAESGNTLTFATGKVARRKEKEAAAAQKEANIALSKQLGLGAASMNIEDKYKFMITATNTKKEGAADSAWDD* | 566 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso11g1834 | 565 | Coils | Coil | 206 | 226 | - | - | |
Gso11g1834 | 565 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 151 | 327 | IPR014001 | - | |
Gso11g1834 | 565 | CDD | DEADc | 131 | 328 | - | - | |
Gso11g1834 | 565 | Gene3D | - | 80 | 331 | IPR027417 | - | |
Gso11g1834 | 565 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 192 | 488 | IPR027417 | - | |
Gso11g1834 | 565 | Gene3D | - | 333 | 527 | IPR027417 | - | |
Gso11g1834 | 565 | Pfam | Helicase conserved C-terminal domain | 351 | 468 | IPR001650 | - | |
Gso11g1834 | 565 | SMART | ultradead3 | 139 | 342 | IPR014001 | - | |
Gso11g1834 | 565 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP2-LIKE | 19 | 530 | - | - | |
Gso11g1834 | 565 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 273 | 281 | IPR000629 | - | |
Gso11g1834 | 565 | Coils | Coil | 509 | 529 | - | - | |
Gso11g1834 | 565 | CDD | SF2_C_DEAD | 339 | 477 | - | - | |
Gso11g1834 | 565 | MobiDBLite | consensus disorder prediction | 50 | 76 | - | - | |
Gso11g1834 | 565 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 120 | 148 | IPR014014 | GO:0003724 | |
Gso11g1834 | 565 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 19 | 530 | - | - | |
Gso11g1834 | 565 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 351 | 509 | IPR001650 | - | |
Gso11g1834 | 565 | SMART | helicmild6 | 387 | 468 | IPR001650 | - | |
Gso11g1834 | 565 | Pfam | DEAD/DEAH box helicase | 144 | 315 | IPR011545 | GO:0003676|GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso11g1834 | Gso-Chr11 | 32233685 | 32244925 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso11g1834 | 120 | 490 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 35.733 | 3.64e-71 | 232 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso11g1834 | K12823 | - | gmx:100818387 | 1053.89 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso11g1834 | 11 | 32233685 | 32244925 | Gso11g1834 | 11 | 32233685 | 32244925 | ECH |