Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1817 ATGGACAGCGACATTTCCCAGTGGGTGACGGAGTTCCTACTCCGCAGCTCCGTCCCCGATTCCCTAATCCAAAAAACCCTAGCCGCCCTCCCTCTCTCTACCGCCTCCCCCCGCCTCAAGAAAACCCTCCTCCTCCGCACCCTCCAAACCCTCCTCCGCACAGCCACACTCTCCGAAACCGCGCTCGACATCCTCGAACTCCTCGAACCCAGTGCCCCTGTCTCCGACGCGCACCGCCGCGCGTACTGCGCAGTCGCCGTGGAGTGCACCGTAAAGTACCTCGCCGCGTGCCCCGAAGACATCGATGGCGAGTACGCCGGAGCCGTGCGGCGGATCTGGCGCGGCCGGGTGTCGGCGCTGAAGGCGCGCTGGAGCCGGCTGGTCTCCGGCGAGCTGGCGCGGTGGCGCGACGTCGTCGAGGACGCGCTCGGGGATTCTAGGGCTCGCCAGAGGCTGGTGGGGTTGAATAGTCGGAGGGACGCAATGAAAGAGGTGAGGGTGTTTTTGAAGGAAGCGTGGGGAGCGATGGGGCCTTCGTTTTTGGAAACTGTTGCGGCGAAGGAGAAGAATAAGGATGAAGGTGCTCGTGATAATGATGATAATGATAATATATGTGATGATCATGATGATGGTGCATGCATGGAGGATGTGGCAATGCATGGTGAGAATCAGGAACCATTGGAAGAGAGTGTTGATGCGAATCAGGAAGTGGGTGGGTTTGACTTATCTCCTCGGAGGGATGAAGCAATTCCAAAGCGGAATTCTCAGCTTAAACACAAACACTCTGCATTTCGTGCATCTCATAGGGGAAGGGGAGTTGAAATATCTAGTCCGAAGGAAGTGAAGGCAACCAAATCATGGAGCAAACATGATCCTGTGCCTAGTGCTGAAGTTAAAAAAGTTCGGGAATCCCTAAAATCAAGTTCTTTGGAGTTACGAGCGTTGGTTAAGGATCCTCTTCCCCATGCATTGCATATATCTGATGTTGTAAGATCCAAATTGGCAACTAGTGATACAAAAACTGAGCCACTGATTGAAAACCAACATGAAGATGTAGAAGTACAGGATCCAGATGTTTGTCAGAGTATTGTACCTTTTCAGCCTAATGATGTCAATCTTGGGAAGAAGTCTTTTGTTCATTGTAGTAATATTCATCAGCCCTACTTGATGGAACAGAACATAAGTGCTCGTACCTTTGAGTGGGAGGATTCAGTAGACAACTCGCCACAAGCAAGACAGCCAAGGAGGAGGAAAAGGAAATGGAGTTCGTTGGAAGAAGAAACACTAAGGGCTGGTGTAAAAATGTTTGGAGAAGGAAACTGGGCATCAATCCGAAGTTTTTACAGTAACGTATTTGAAAATAGAAGTGGAGTTGATCTGAAGGATAAGTGGAGAAACATGATACGGTGA 1410 0.5092 MDSDISQWVTEFLLRSSVPDSLIQKTLAALPLSTASPRLKKTLLLRTLQTLLRTATLSETALDILELLEPSAPVSDAHRRAYCAVAVECTVKYLAACPEDIDGEYAGAVRRIWRGRVSALKARWSRLVSGELARWRDVVEDALGDSRARQRLVGLNSRRDAMKEVRVFLKEAWGAMGPSFLETVAAKEKNKDEGARDNDDNDNICDDHDDGACMEDVAMHGENQEPLEESVDANQEVGGFDLSPRRDEAIPKRNSQLKHKHSAFRASHRGRGVEISSPKEVKATKSWSKHDPVPSAEVKKVRESLKSSSLELRALVKDPLPHALHISDVVRSKLATSDTKTEPLIENQHEDVEVQDPDVCQSIVPFQPNDVNLGKKSFVHCSNIHQPYLMEQNISARTFEWEDSVDNSPQARQPRRRKRKWSSLEEETLRAGVKMFGEGNWASIRSFYSNVFENRSGVDLKDKWRNMIR* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1817 469 PANTHER MYB TRANSCRIPTION FACTOR 1 469 - -
Gso11g1817 469 CDD SANT_TRF 419 469 - -
Gso11g1817 469 Gene3D - 409 469 - -
Gso11g1817 469 ProSiteProfiles Myb-like domain profile. 413 468 IPR001005 -
Gso11g1817 469 SMART sant 417 469 IPR001005 -
Gso11g1817 469 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 413 469 IPR017930 -
Gso11g1817 469 PANTHER MYB TRANSCRIPTION FACTOR 1 469 - -
Gso11g1817 469 SUPERFAMILY Homeodomain-like 414 468 IPR009057 -
Gso11g1817 469 Pfam Myb-like DNA-binding domain 418 467 IPR001005 -
Gso11g1817 469 MobiDBLite consensus disorder prediction 253 294 - -
Gso11g1817 469 MobiDBLite consensus disorder prediction 272 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1817 Gso-Chr11 31308422 31313515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1817 421 468 Single Myb Histone (SMH) Gene Family AT1G15720 52.083 1.22e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso11g1817 Myb_DNA-binding 6.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1817 - K11111 gmx:100819448 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1817 11 31308422 31313515 Gso11g1817 11 31308422 31313515 ECH