Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1815 ATGCTTCTTTGGCGAAGGAGGTGGTCCAGCCGCGGTGGAGAGGCGACGCCGACGAGGGAGAATAAACAGGAGGAAGGAAAGGAAGAAGGTGTAAACGAAGATGAGGGAGGCTCTGAGGGCTTTATGAAGCGGAAGCAACTCGACGAAGAGGCTACTTCAATGTGGAAGAGATTCACGAAGGGAAAAAAGGTTCAACTCGCATTCATTGCGAATGATTCTGCAAGGAAGTTAACATGCAAGAAAAGGAAGAAGGGATTGCTGAAAAAGGTTGATGAACTCAGCACCCTTTGCGGCATTAACGCATGCGCTATAGTTTATAGCCCCAATGATCCCGAGCCAGAGGTTTGGCCATCCCATTGGGGTGTGCATAGGGTGCTGGAAAAGTTCACGACCATGCCTGAATTGGAGCAAAGCAAGAAGATGGTGAACCAAGAGAGTTTTACTGCACAAAGGATCCAGAAGGGTAACGAGCAAATGATGAAGCTGATGAAGGACAATAGGGAGAAGGAGTTAACCTTGTTCATGTTTCAGTGCCTTAATGCTGGTAGGGTTCAGCCTAATAATAACGTGACCGAAGATGATTTGAATGTTTTTTCATCGATGATTGATCAGAACCTGAAGGACCTTAGTGAAAGGATGGAGGCTCTGAAAGTTAATGAGATGACACCAAATATCGATCAATCCCGGATGGAAATTCCAACATTGAATTATGGCCATGGGTCGGATATCAATATTGCTGACCCCATGCAAAGCCAGTGGTTTATGGATCACTTGCTTAATTGTGGTGATGGTGATGAGACATTAATAATGCCTCCGTTTGATGATGCTAATCTCCAACTCCAAACTGACTTTATGTCAAACCTGTTACCTTGA 873 0.4513 MLLWRRRWSSRGGEATPTRENKQEEGKEEGVNEDEGGSEGFMKRKQLDEEATSMWKRFTKGKKVQLAFIANDSARKLTCKKRKKGLLKKVDELSTLCGINACAIVYSPNDPEPEVWPSHWGVHRVLEKFTTMPELEQSKKMVNQESFTAQRIQKGNEQMMKLMKDNREKELTLFMFQCLNAGRVQPNNNVTEDDLNVFSSMIDQNLKDLSERMEALKVNEMTPNIDQSRMEIPTLNYGHGSDINIADPMQSQWFMDHLLNCGDGDETLIMPPFDDANLQLQTDFMSNLLP* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1815 290 CDD MADS_SRF_like 62 143 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gso11g1815 290 ProSiteProfiles MADS-box domain profile. 59 109 IPR002100 GO:0003677|GO:0046983
Gso11g1815 290 Gene3D - 71 168 IPR036879 GO:0003677|GO:0046983
Gso11g1815 290 SUPERFAMILY SRF-like 62 153 IPR036879 GO:0003677|GO:0046983
Gso11g1815 290 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 68 110 IPR002100 GO:0003677|GO:0046983
Gso11g1815 290 MobiDBLite consensus disorder prediction 1 43 - -
Gso11g1815 290 MobiDBLite consensus disorder prediction 17 43 - -
Gso11g1815 290 PRINTS MADS domain signature 61 81 IPR002100 GO:0003677|GO:0046983
Gso11g1815 290 PRINTS MADS domain signature 81 96 IPR002100 GO:0003677|GO:0046983
Gso11g1815 290 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 61 230 - -
Gso11g1815 290 SMART madsneu2 59 118 IPR002100 GO:0003677|GO:0046983
Gso11g1815 290 PANTHER MADS BOX PROTEIN 61 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1815 Gso-Chr11 31247960 31252972 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1815 62 217 Type I MADS-box Gene Family AT5G48670 57.051 1.75e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso11g1815 SRF-TF 5.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1815 - - gsj:114373167 567.77