Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1813 ATGCCCAGAACAAAGGTGAAAATCGCCTTCATAACCAACGATGCTGCGAGGAGGGCAGCATACAGGAAAAGGAAGAAGGGAATTCTGAAGAAGATGGAGGAACTCAGCACCCTTTGTGGAATTGAAGCATGTGCTATAGCATATAGCCCCTATGATCCCGAGCCAGTGATTTGGCCATCCGAATTGGGTGTCCATCATGTGCTGGGAAAATTCAGGACCATGTCTGAATGGGAGAAGAACAAGAAGATGGCGAACCAGGAGAGCTTCCTAGGGCATATGATCGCGAAGCACAAGGAGCAGCTGAAGAAACTCGTGAAGGAAAACAAGGAGAAGGAGATGACCGTGTTCATGCATCAATGCCTTGATGAAGGGAGGGTTCTGCCAGATAACAACTTGACCGCAGACGATTTGAACGATCTTTCGTCGATCATCGAACAGAACCTGAAGGATGTTTGTAGAAGGTTGGAAACGCTGAATGTTATGGAGAAGACACCACCACACCAACAACCCCCCCAGATCCAATCATCACCAGTGTTGGATATGAGTGCTAACCATGATCAAAAGCAGAAGAAGTTTATGGATTTGCTTAATGGTAATGAGGATGAGACAACAACAGCGCCTCCATTTGAATCAGATGCTAATCTCCAACTCCAAATTGGGTTTTAG 666 0.4625 MPRTKVKIAFITNDAARRAAYRKRKKGILKKMEELSTLCGIEACAIAYSPYDPEPVIWPSELGVHHVLGKFRTMSEWEKNKKMANQESFLGHMIAKHKEQLKKLVKENKEKEMTVFMHQCLDEGRVLPDNNLTADDLNDLSSIIEQNLKDVCRRLETLNVMEKTPPHQQPPQIQSSPVLDMSANHDQKQKKFMDLLNGNEDETTTAPPFESDANLQLQIGF* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1813 221 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Gso11g1813 221 SUPERFAMILY SRF-like 3 93 IPR036879 GO:0003677|GO:0046983
Gso11g1813 221 CDD MADS_SRF_like 3 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gso11g1813 221 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 174 - -
Gso11g1813 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso11g1813 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso11g1813 221 Coils Coil 94 114 - -
Gso11g1813 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Gso11g1813 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso11g1813 221 PANTHER MADS BOX PROTEIN 3 174 - -
Gso11g1813 221 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1813 Gso-Chr11 31193004 31193943 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1813 1 158 Type I MADS-box Gene Family AT5G48670 53.165 3.05e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso11g1813 SRF-TF 9.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1813 - - gmx:100816242 423.32