Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1812 ATGGGTCGGAAGAAGGTGAAACTTGCATTCATAGCCAACAATACCAAAAGGATCACAACATTCAGGAAAAGAAAGAAGTCACTGATGAAGAAGGCGGAGGAACTCAACACCCTTTGTGGCATTGAAGCGTTCAGAAGCAGGCCTGAATTGGATCAGGGTAGGAAGAAAGTGAACCAAGAGAGTTTCGTTTCCCAAAGTATCGTGAAGGGTCAAGACAAGTTGCAGAAAGTTGTGAAGGAGAACAAGGAGATTGAAATGTCCTCGTTCATGAGTCAGTGTCTTAATATAGGGAATGTTCAACCTTGTAAGAACATGACCACAGCTGATTTGAATGTTCTTTCATCTATGATTGAACAGGATCTGATGGACGTTGATAAAAGAATGGAAATGCTGAATTGCAACCAGCTGGAGACACCATCTCAACTCCAGATGCAAACAACACCAACATACAAACCTGATATGCAAACCCTAGCAAACCAACCTGGTGATCAGATGCAAACCCTAGAAAACCAACCTGATATGCAAACCCTAACAAACCAACTTGGTGATCAGATGCAAAACCTAGCAAACTAA 573 0.4206 MGRKKVKLAFIANNTKRITTFRKRKKSLMKKAEELNTLCGIEAFRSRPELDQGRKKVNQESFVSQSIVKGQDKLQKVVKENKEIEMSSFMSQCLNIGNVQPCKNMTTADLNVLSSMIEQDLMDVDKRMEMLNCNQLETPSQLQMQTTPTYKPDMQTLANQPGDQMQTLENQPDMQTLTNQLGDQMQNLAN* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1812 190 SUPERFAMILY SRF-like 1 43 IPR036879 GO:0003677|GO:0046983
Gso11g1812 190 CDD MADS_SRF_like 2 43 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gso11g1812 190 SMART madsneu2 1 56 IPR002100 GO:0003677|GO:0046983
Gso11g1812 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 43 IPR002100 GO:0003677|GO:0046983
Gso11g1812 190 Gene3D - 14 44 IPR036879 GO:0003677|GO:0046983
Gso11g1812 190 ProSiteProfiles MADS-box domain profile. 1 42 IPR002100 GO:0003677|GO:0046983
Gso11g1812 190 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 43 - -
Gso11g1812 190 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 41 174 - -
Gso11g1812 190 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso11g1812 190 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso11g1812 190 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 43 - -
Gso11g1812 190 PANTHER SERUM RESPONSE FACTOR HOMOLOG 41 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1812 Gso-Chr11 31185721 31186374 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1812 1 131 Type I MADS-box Gene Family AT5G48670 43.671 5.71e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso11g1812 SRF-TF 1.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1812 - - gmx:100815178 360.918