Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1811 ATGGCCCCGGGAAAGCTGAAACTCACATTCATAGGCAACGATTTTAAAAGAAAAAACGTATGCAAGAAACGGAAGCAGTCACTGCTGAAGAAGACAGAGGAACTCAGCATGCTTTGTGGCGTTGAAGCATGTGCTATAGTGTATGGCCCCAATGATCCTCGGCCAGTGATTTGGCCATCCGAATTGGGTGTCGAAAATGTGCTGCGAAAGTTCATGAGCATGCCACAATTGGAGCAAAGCAAAAAGATGGTGAACCAAGAGAGTTTCATTGCACAAAGAATCATGAAGAGTAAAGAAAAGTTGCAGAAAATTGTGAAGGAAAACAAGGAGATTGAAATGTCCTTGTTCATGGCTCATTGCTTTAAGACAGGAATGTTTCAGCCTGATATCAATATGACCACAGCTGATATGAATGTTCTTTCATCGATAATTGAACAGAACCTGAAAGACATTGATAAAAGGATGGAAATGCTGAAAGCCAACCAGGTGATACCAAACCAGCCCGATGTTGAAACATCAACATTGCAACCCCAGATAATGCATACACTGACATACCAACCTCCTATGCAAACATTTGCATTCCAACCGCAGATTCAAATATCAGAATTCCAAACCCAGATCCAAACACCAGAATTCCCAACACAAACATACCAATCCAAGATGCAAACACAAACATTTCAACCCCAGATGCAGTCACCAGCATTATTCCAACCCCGGATGCAATCACCTGCATTTTTCCAACCCCAGATAATGCAAACACCATCATACCAACCCCACACACAAACACCAGCACTTGAAGATATGACACTGCTTAATTATGGCAATGGGTTGGGTATGCAAATGCAGCAGTTCAATGGTAATGGGTATGAGACAACAATGCCTGCATTTGGTGGTGCTAACTTCCCTCTCTAA 912 0.4243 MAPGKLKLTFIGNDFKRKNVCKKRKQSLLKKTEELSMLCGVEACAIVYGPNDPRPVIWPSELGVENVLRKFMSMPQLEQSKKMVNQESFIAQRIMKSKEKLQKIVKENKEIEMSLFMAHCFKTGMFQPDINMTTADMNVLSSIIEQNLKDIDKRMEMLKANQVIPNQPDVETSTLQPQIMHTLTYQPPMQTFAFQPQIQISEFQTQIQTPEFPTQTYQSKMQTQTFQPQMQSPALFQPRMQSPAFFQPQIMQTPSYQPHTQTPALEDMTLLNYGNGLGMQMQQFNGNGYETTMPAFGGANFPL* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1811 303 PANTHER MADS BOX PROTEIN 2 292 - -
Gso11g1811 303 PANTHER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 2 292 - -
Gso11g1811 303 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso11g1811 303 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Gso11g1811 303 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gso11g1811 303 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Gso11g1811 303 SUPERFAMILY SRF-like 4 95 IPR036879 GO:0003677|GO:0046983
Gso11g1811 303 Gene3D - 14 109 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1811 Gso-Chr11 31180297 31181208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1811 1 159 Type I MADS-box Gene Family AT5G48670 45.283 1.35e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso11g1811 SRF-TF 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1811 - - gmx:100814653 614.764