Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1808 ATGGCCCCGGGAAAGCTGAAACTCACATTCATAGGCAACGATTCTAAAAGAAAAAACGTATGCAAGAAACGGAAGCAGTCACTGCTGAAGAAGACGGAGGAACTCAGCATGCTTTGTGGCGTTGAAGCATGTGCTATAGTGTATGGCCCCGATGATCCTCGGCCAGTGATTTGGCCATCCGAATTGGGTGTCGAAAATGTACTGCGAATGTTCATGAGCATGCCACATTGGGAGCAAAGCAAAAAGATGGTGAACCAAGAGAGTTTCATTGCACAAAGTATCATGAAGAGTAAAGAAAAGTTGCAGAAAATTGTGAAGGAAAACAAGGATATTGAAATGTCCTTGTTCATGGCTCATTGCTTTAAGACAGGAATGTTTCAGCCTGATATCAATATGACCACAGCTGATATGAATGTTCTTGCATCCATAATTGAACAGAACCTGAAAGACATTGATAAAAGGATGGAAATGCTGAAAGCCAACCAGGTGATACCAAACCAGCCCGATGTTGAAACATCAACATTGCAACCCCAGATAATGCATACACTGACATACCAACCCCCTATGCAAACATTTTCATTCCAACCGCGGATTCAAATACCAGAATTCCAAACCCAGATCCAAACACCAGAATTCCCAACTCAAACATACCAATCCAAGATGCAAACACAAACATTTCAACCCCAGATGCAGTCACCAGCATTATTCCAACCCCGGATGCAATCACTTGCATTTTTCCAACCCCAGATAATGCAAACACCATCATACCAACCCCAGATAATGCAAACACCATCATACCAACCCCACATGCAAACACCAGCACTTGAAGATATGACACTGCTTAATTATGGCAATGGGTCGGGTATGCAAATGCAGCAGTTCAATGGTAATGGGTATGAGACAACAATGCTTGCATTTGGAGGTGCTAACTTCCCTCTCTAA 942 0.4289 MAPGKLKLTFIGNDSKRKNVCKKRKQSLLKKTEELSMLCGVEACAIVYGPDDPRPVIWPSELGVENVLRMFMSMPHWEQSKKMVNQESFIAQSIMKSKEKLQKIVKENKDIEMSLFMAHCFKTGMFQPDINMTTADMNVLASIIEQNLKDIDKRMEMLKANQVIPNQPDVETSTLQPQIMHTLTYQPPMQTFSFQPRIQIPEFQTQIQTPEFPTQTYQSKMQTQTFQPQMQSPALFQPRMQSLAFFQPQIMQTPSYQPQIMQTPSYQPHMQTPALEDMTLLNYGNGSGMQMQQFNGNGYETTMLAFGGANFPL* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1808 313 PANTHER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 2 273 - -
Gso11g1808 313 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Gso11g1808 313 PANTHER MADS BOX PROTEIN 2 273 - -
Gso11g1808 313 Gene3D - 13 106 IPR036879 GO:0003677|GO:0046983
Gso11g1808 313 SUPERFAMILY SRF-like 4 95 IPR036879 GO:0003677|GO:0046983
Gso11g1808 313 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gso11g1808 313 Coils Coil 141 161 - -
Gso11g1808 313 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Gso11g1808 313 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1808 Gso-Chr11 31083060 31084001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1808 1 159 Type I MADS-box Gene Family AT5G48670 44.654 2.04e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso11g1808 SRF-TF 2.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1808 - - gmx:100810352 629.017