Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1794 ATGAAGTGGGAAATGGAGATCCTCCCTCCTGCATCACCTTACACGTACAATTCCAATTGGCTTCTTGATGACAACAGGACCAACAACAACACCAAATGGACCCCTGCAGAGAACAAGCTGTTTGAGAATGCTCTTGCGGTTTACGATAAGGACACGCCGGAACGATGGCACAAGGTAGCCGAGATGATACCGGGAAAAACAGTCATGGATGTGGTGAAGCAGTACAAGGAATTGGAAGCAGATGTTTGTGACATAGAAGCAGGGTTGATCTCAATTCCAGGATACAGAAGCACCACCACCACCTCACCCTTCACCTTGGATTGGGTTAATCCTGCCTATGGTGATGGCTTCAAAGGACTCACTGCTAAGAGATCCTCCTCTGGCAGACCTCCTGAGCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAAGAACACAAGTTGTTTCTTCTGGGGCTGAAGAAGTATGGCAAAGGTGATTGGAGGAACATATCGCGCAATTATGTGATCACTCGGACGCCAACTCAAGTTGCTAGCCATGCTCAGAAGTACTTCATAAGGCAACTATCAGGAGGCAAGGACAAGAGGAGGGCTAGCATACATGACATTACAACGGTTAATCTCACAGAAACCACCAGAACTTCTTCTGATGAAAGCAAGAGATCCACTTCGCCACAACATTCCACTATTCTCTCACACCAGCAGCAGCAGCAGCAGCAGCCGAATTCTAGTGTCACCTCATCCGGATTGAACCTCCAGTGGAGCAATCAGCCAAATGCAGGAGTGGCTATGCCACTCAACCCTGCACATGAACAAGTCTTCATGTCCCCTTATGGCCTTAACTCATATGGTTTTAAGATGCATGGCCAAAATCTGCACAGAAGTTCTGTTCATGAGTCTTCTTACCTAGGACCTCAGACACCAAACATGGTTTTCCAAATGCTGCCCTCCCAACACTATTCCCATGCATGA 972 0.4763 MKWEMEILPPASPYTYNSNWLLDDNRTNNNTKWTPAENKLFENALAVYDKDTPERWHKVAEMIPGKTVMDVVKQYKELEADVCDIEAGLISIPGYRSTTTTSPFTLDWVNPAYGDGFKGLTAKRSSSGRPPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNYVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTRTSSDESKRSTSPQHSTILSHQQQQQQQPNSSVTSSGLNLQWSNQPNAGVAMPLNPAHEQVFMSPYGLNSYGFKMHGQNLHRSSVHESSYLGPQTPNMVFQMLPSQHYSHA* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1794 323 Gene3D - 25 92 - -
Gso11g1794 323 ProSiteProfiles Myb-like domain profile. 133 185 IPR001005 -
Gso11g1794 323 MobiDBLite consensus disorder prediction 202 253 - -
Gso11g1794 323 MobiDBLite consensus disorder prediction 196 253 - -
Gso11g1794 323 SUPERFAMILY Homeodomain-like 31 84 IPR009057 -
Gso11g1794 323 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 136 188 IPR006447 GO:0003677
Gso11g1794 323 SUPERFAMILY Homeodomain-like 134 188 IPR009057 -
Gso11g1794 323 CDD SANT 32 78 IPR001005 -
Gso11g1794 323 Gene3D - 139 189 - -
Gso11g1794 323 SMART sant 137 187 IPR001005 -
Gso11g1794 323 SMART sant 29 81 IPR001005 -
Gso11g1794 323 Pfam Myb-like DNA-binding domain 32 76 IPR001005 -
Gso11g1794 323 Pfam Myb-like DNA-binding domain 140 185 IPR001005 -
Gso11g1794 323 ProSiteProfiles SANT domain profile. 141 189 IPR017884 -
Gso11g1794 323 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 297 IPR043363 -
Gso11g1794 323 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 297 - -
Gso11g1794 323 MobiDBLite consensus disorder prediction 120 140 - -
Gso11g1794 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 133 189 IPR017930 -
Gso11g1794 323 CDD SANT 140 185 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1794 Gso-Chr11 29503513 29506261 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso11g1794 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1794 - - gmx:778181 654.055