Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1787 ATGCAAACAGAAGCAAAGCAACAAAAATTGTTGAAGGGTAAATCCCCCCTTGATCATGATCCCGGTGAAGCAAAGAAGAGTGATCAACCCTCACAATTCCTTTGTGGTTTATGTTTTAATGACAAACCAGTGTCTCAAATGTTCAAAGAGGGTAAGTGTAACCACCCCTTTTGTACTCACTGCATATCCAAACACGTGGCTACTCAGATGCACCAAAACATTCTCAAGGTGATGTGTCCAAACCCTAACTGTCCCGTGGAATTGAAGCCCGAATATTTTCACAACATTTTGGCCAGTGAAGTCATTGTTAGATGGGAAACCGTGAGGTGTGAGTCTTTGATTGTTGGGTTGGAGAAGACCTACTGTCCCTTCAAGGACTGTTCTGTTTTGTTGGTGAATGATGGAGAAAAAGATGTGATCAGTGCTGAGTGCCCCTCTTGTCATAGGCTATTTTGCGCACGGTGTAAGGTTCCTTGGCATGGAATTATGAGTTGTGAAGAATTCCAAGAGATAGAAAGGAGCAAAGATGAAATAGTGTTGAAAAACTAA 549 0.4208 MQTEAKQQKLLKGKSPLDHDPGEAKKSDQPSQFLCGLCFNDKPVSQMFKEGKCNHPFCTHCISKHVATQMHQNILKVMCPNPNCPVELKPEYFHNILASEVIVRWETVRCESLIVGLEKTYCPFKDCSVLLVNDGEKDVISAECPSCHRLFCARCKVPWHGIMSCEEFQEIERSKDEIVLKN* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1787 182 ProSiteProfiles TRIAD supradomain profile. 31 182 IPR044066 -
Gso11g1787 182 SUPERFAMILY RING/U-box 114 170 - -
Gso11g1787 182 ProSitePatterns Zinc finger RING-type signature. 53 62 IPR017907 -
Gso11g1787 182 SMART ibrneu5 103 165 IPR002867 -
Gso11g1787 182 Pfam IBR domain, a half RING-finger domain 118 165 IPR002867 -
Gso11g1787 182 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 17 173 - -
Gso11g1787 182 ProSiteProfiles Zinc finger RING-type profile. 35 80 IPR001841 -
Gso11g1787 182 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 17 173 IPR031127 GO:0004842|GO:0016567
Gso11g1787 182 SUPERFAMILY RING/U-box 30 112 - -
Gso11g1787 182 MobiDBLite consensus disorder prediction 11 26 - -
Gso11g1787 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 114 IPR013083 -
Gso11g1787 182 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1787 Gso-Chr11 28756790 28757338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1787 35 172 C3H Transcription Factor Family AT2G19610 26.000 8.99e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1787 K11975 - gmx:102662752 394.045