Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1759 ATGGGGAGTATGAATGATTCAGACAGAAAACGACGTCATTTTAGCTCCTTGTCCCCTACACCTGCAGCTGCTACTGCCAAGAAGCTACCCTTCTTGCCCGTTTCAGAAGACAAAAAGCTTGATATTGTTGTACTTCAGTATCAAAATCAAAAGCTTACACAAAAATTAGAAACTCAGAAGTTAGAGTATGCAGGTCTTGAGAATAGGTTTTCTCTTCTGAAGGAGAGTCAAAAGTCATATGATTCCACTTTAGCAGTGGTCAAGAAGTCTTGGGAGCAGCTGGTTGATGATCTGGAGTTGTGTTCTGAACGTACGAGAGAGTCAAGCAGAAAAATAAATTCTAGATTTGCATCAATCATGGAAGATGGCAGTCCATCTACTGTTCAGGATGTGTTTCTTAGCCGACTAATGCAAACTGATGCAACTGAATGTGCGTCCACATATAATTTTGCAAATCAGATGGAAGAGCATAGAGAAATTACTACTGAAAAAGCTAAAAGCATTTTAAAAAATATGGTGACAGCTGTTAATAACCTTTGGGTTCTGATGGATGGATTGCATACTGCATTTTTGAAAAAGCTTCCTGGAGGTGATTTGTGTAGGCAGAAATTGTCCTCTGATCTTGAGGTGATAGTTAAAAACTTGAGATTGGAATTCAGTGAACTTCATTCAAAGCACAAGTCTTTAGCAAGTGAGTTCCAAATTCAGAGAGATCTTAATGCCAAAAATAAAGCTGACCTTGAAAGATTAAAAGGGGAACTGGCAAGCACTGTCAAAGAGTTAGAAGAAAGCAATCACAAGCTTGCAACTCTTAAGGCAGAGAGAGATGCTGCAAAAGGGGTTCTCCCACTCTTAAATGTTGGAAGTACACACATTCCTAGTGATAAGATCAAAGACAAGCAAAAGGATTTGCAAGATATGGAATCTACTTTGAAGGAGCTATTGGACCAAGGTTCAGCTCGATTAATGGAACTGAAAAGTCTTCACGAGGAAAGAATAAGAATATTACAGCAGTTGTGTGATCTACAGAACACTTTGAAGAATTTGAAGTGTATTACTTCTTCCCATGCTTTCCAATTGGTTAGAGATCAGATAGAAAAGTCGAAAGCAGAAGTCCTGGAGTATCAGGCCTTATATGAGAAACTACAGGTTGAGAAGGATAATCTTGCATGGAGGGAGAGGGAGTGGTACATTAAAAATGATTTAGCAGATGTTTTTCAAAGATCTGTGGCAGTTTCAGATTTTAGGGTGGCTGATCTACGCTTTGAGATACAGAAAAAGATAGAGGAAAGATATGTGATTGAAAATAAGCTGAAAGAGGAAGCAAGAGGGCCTGGAAGGAAGCAAATTATTGCTGAATTTAAATCTCTGGTTTCTTCATTTCCTGATGAAATGGGGTCTATGCAAATCCAGCTAAGAAAATATAAAGAATCGGCTTCAGATATCCATTCACTGCGTGCAGATGTGAAGTCTGTTTCTAGTATTCTTGACAGAAAGGTAAAAGAATGTGATGTATTTTCTGTTAGGTCTGCTGGTCAACTTGCTGAGATAAAAAGACTGCTTGGTGTGGTTCAAGATTTGAGGGAGAGTGAGCGGGACTTGAAGTTGATATTGGTAATGTTTAGACGTGAGTCCATTGATTCAAGGGATGTCATGGATGCACGGGAAGCAGAATACAGAGCTTGGGCTCGGGTTCAAAGTTTGAAATCATCTCTTGATGAGCACAACTTAGAACATCGAGTTAAGACAGCCAATGAAGCAGAGGCAAGATCTCAACAAAAGCTGGCTACTGCTGAAGCTGAGATAGCAGACATGCGACAGAAATTAGAAGATTCTAAAAGGCAAATGTGTGATCTGTCTGATGTCTTGAAATCTAAGAATAAACAAAATGAGAACTACATGTCTGAAATAGAGAGTATTGGACAGGCATATGACGACATGCAAACTCAAAACCAACATCTGTTGCAGCAGATTACTGAAAGAGATGATTACAATATTAAGCTTGTTTTGGAGGGTGTACGGGCGAGACAGAAGCAGGACTCATTGCTCATGGAGAAGCGGGTCATTGAACATGAGATTCAGCAAGCAAACATATCATTGAATGTATATGATGTGAAAGCTACAAGAATTGAAGACCAGTTGAAGTTTTGTTTGGATCAGCTTCAAAAACTTGCAGAGGATAAGCTTCAAAGTTCCGTCACTTTGGAAAATACACAAAGAAGGCTGTCCGATGTTAGAAGACAATTTCAACAGGTTAGGGATACAGTGGTGGAAATGCAATCTAAAATTGGTAGTAATCGAGTGACGTGCATGGAGTTACAAGTAGAACTTGAGAAAGAAAGGTTTGCCAAGAAAAGAGTGGAAGAGGATCTGGAGGTCGCTAGGAGAAAGTTTACGCGCCTTAAAGAGCAGAATGAGGGCTCTTCAGTAACTGAAAAGCTTCAAGAGGAACTTGAAGAGTACAGGGACATTATCAAGTGCAGTATCTGCCAAGACAGGGCAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTCTGCTACTCATGTATCCAGAAAGTTGCCGGGAGTAGGCATCGCAAGTGTCCACAATGTTCTACAAGCTTTGGGGCTAACGATGTTAAGTCCGTTTATTTATAA 2640 0.3977 MGSMNDSDRKRRHFSSLSPTPAAATAKKLPFLPVSEDKKLDIVVLQYQNQKLTQKLETQKLEYAGLENRFSLLKESQKSYDSTLAVVKKSWEQLVDDLELCSERTRESSRKINSRFASIMEDGSPSTVQDVFLSRLMQTDATECASTYNFANQMEEHREITTEKAKSILKNMVTAVNNLWVLMDGLHTAFLKKLPGGDLCRQKLSSDLEVIVKNLRLEFSELHSKHKSLASEFQIQRDLNAKNKADLERLKGELASTVKELEESNHKLATLKAERDAAKGVLPLLNVGSTHIPSDKIKDKQKDLQDMESTLKELLDQGSARLMELKSLHEERIRILQQLCDLQNTLKNLKCITSSHAFQLVRDQIEKSKAEVLEYQALYEKLQVEKDNLAWREREWYIKNDLADVFQRSVAVSDFRVADLRFEIQKKIEERYVIENKLKEEARGPGRKQIIAEFKSLVSSFPDEMGSMQIQLRKYKESASDIHSLRADVKSVSSILDRKVKECDVFSVRSAGQLAEIKRLLGVVQDLRESERDLKLILVMFRRESIDSRDVMDAREAEYRAWARVQSLKSSLDEHNLEHRVKTANEAEARSQQKLATAEAEIADMRQKLEDSKRQMCDLSDVLKSKNKQNENYMSEIESIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRARQKQDSLLMEKRVIEHEIQQANISLNVYDVKATRIEDQLKFCLDQLQKLAEDKLQSSVTLENTQRRLSDVRRQFQQVRDTVVEMQSKIGSNRVTCMELQVELEKERFAKKRVEEDLEVARRKFTRLKEQNEGSSVTEKLQEELEEYRDIIKCSICQDRAKEVVITKCYHLFCYSCIQKVAGSRHRKCPQCSTSFGANDVKSVYL* 880
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1759 879 Coils Coil 49 69 - -
Gso11g1759 879 Pfam Zinc finger, C3HC4 type (RING finger) 826 867 - -
Gso11g1759 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 808 879 IPR013083 -
Gso11g1759 879 MobiDBLite consensus disorder prediction 1 15 - -
Gso11g1759 879 Coils Coil 770 804 - -
Gso11g1759 879 PANTHER RING FINGER PROTEIN-RELATED 1 879 IPR013956 GO:0004842|GO:0010390
Gso11g1759 879 SMART ring_2 827 865 IPR001841 -
Gso11g1759 879 ProSitePatterns Zinc finger RING-type signature. 842 851 IPR017907 -
Gso11g1759 879 Coils Coil 707 727 - -
Gso11g1759 879 Coils Coil 735 755 - -
Gso11g1759 879 Coils Coil 365 385 - -
Gso11g1759 879 Coils Coil 297 317 - -
Gso11g1759 879 CDD RING-HC_BRE1_like 825 866 - -
Gso11g1759 879 MobiDBLite consensus disorder prediction 1 22 - -
Gso11g1759 879 ProSiteProfiles Zinc finger RING-type profile. 827 866 IPR001841 -
Gso11g1759 879 SUPERFAMILY RING/U-box 819 877 - -
Gso11g1759 879 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 1 879 - -
Gso11g1759 879 Coils Coil 581 615 - -
Gso11g1759 879 Coils Coil 244 281 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso11g1759 Gso-Chr11 25326926 25362219 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1759 819 878 C3H Transcription Factor Family AT2G42030 35.211 4.99e-07 51.2
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1759 K10696 - gmx:100790744 1670.21