Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso11g1759 | ATGGGGAGTATGAATGATTCAGACAGAAAACGACGTCATTTTAGCTCCTTGTCCCCTACACCTGCAGCTGCTACTGCCAAGAAGCTACCCTTCTTGCCCGTTTCAGAAGACAAAAAGCTTGATATTGTTGTACTTCAGTATCAAAATCAAAAGCTTACACAAAAATTAGAAACTCAGAAGTTAGAGTATGCAGGTCTTGAGAATAGGTTTTCTCTTCTGAAGGAGAGTCAAAAGTCATATGATTCCACTTTAGCAGTGGTCAAGAAGTCTTGGGAGCAGCTGGTTGATGATCTGGAGTTGTGTTCTGAACGTACGAGAGAGTCAAGCAGAAAAATAAATTCTAGATTTGCATCAATCATGGAAGATGGCAGTCCATCTACTGTTCAGGATGTGTTTCTTAGCCGACTAATGCAAACTGATGCAACTGAATGTGCGTCCACATATAATTTTGCAAATCAGATGGAAGAGCATAGAGAAATTACTACTGAAAAAGCTAAAAGCATTTTAAAAAATATGGTGACAGCTGTTAATAACCTTTGGGTTCTGATGGATGGATTGCATACTGCATTTTTGAAAAAGCTTCCTGGAGGTGATTTGTGTAGGCAGAAATTGTCCTCTGATCTTGAGGTGATAGTTAAAAACTTGAGATTGGAATTCAGTGAACTTCATTCAAAGCACAAGTCTTTAGCAAGTGAGTTCCAAATTCAGAGAGATCTTAATGCCAAAAATAAAGCTGACCTTGAAAGATTAAAAGGGGAACTGGCAAGCACTGTCAAAGAGTTAGAAGAAAGCAATCACAAGCTTGCAACTCTTAAGGCAGAGAGAGATGCTGCAAAAGGGGTTCTCCCACTCTTAAATGTTGGAAGTACACACATTCCTAGTGATAAGATCAAAGACAAGCAAAAGGATTTGCAAGATATGGAATCTACTTTGAAGGAGCTATTGGACCAAGGTTCAGCTCGATTAATGGAACTGAAAAGTCTTCACGAGGAAAGAATAAGAATATTACAGCAGTTGTGTGATCTACAGAACACTTTGAAGAATTTGAAGTGTATTACTTCTTCCCATGCTTTCCAATTGGTTAGAGATCAGATAGAAAAGTCGAAAGCAGAAGTCCTGGAGTATCAGGCCTTATATGAGAAACTACAGGTTGAGAAGGATAATCTTGCATGGAGGGAGAGGGAGTGGTACATTAAAAATGATTTAGCAGATGTTTTTCAAAGATCTGTGGCAGTTTCAGATTTTAGGGTGGCTGATCTACGCTTTGAGATACAGAAAAAGATAGAGGAAAGATATGTGATTGAAAATAAGCTGAAAGAGGAAGCAAGAGGGCCTGGAAGGAAGCAAATTATTGCTGAATTTAAATCTCTGGTTTCTTCATTTCCTGATGAAATGGGGTCTATGCAAATCCAGCTAAGAAAATATAAAGAATCGGCTTCAGATATCCATTCACTGCGTGCAGATGTGAAGTCTGTTTCTAGTATTCTTGACAGAAAGGTAAAAGAATGTGATGTATTTTCTGTTAGGTCTGCTGGTCAACTTGCTGAGATAAAAAGACTGCTTGGTGTGGTTCAAGATTTGAGGGAGAGTGAGCGGGACTTGAAGTTGATATTGGTAATGTTTAGACGTGAGTCCATTGATTCAAGGGATGTCATGGATGCACGGGAAGCAGAATACAGAGCTTGGGCTCGGGTTCAAAGTTTGAAATCATCTCTTGATGAGCACAACTTAGAACATCGAGTTAAGACAGCCAATGAAGCAGAGGCAAGATCTCAACAAAAGCTGGCTACTGCTGAAGCTGAGATAGCAGACATGCGACAGAAATTAGAAGATTCTAAAAGGCAAATGTGTGATCTGTCTGATGTCTTGAAATCTAAGAATAAACAAAATGAGAACTACATGTCTGAAATAGAGAGTATTGGACAGGCATATGACGACATGCAAACTCAAAACCAACATCTGTTGCAGCAGATTACTGAAAGAGATGATTACAATATTAAGCTTGTTTTGGAGGGTGTACGGGCGAGACAGAAGCAGGACTCATTGCTCATGGAGAAGCGGGTCATTGAACATGAGATTCAGCAAGCAAACATATCATTGAATGTATATGATGTGAAAGCTACAAGAATTGAAGACCAGTTGAAGTTTTGTTTGGATCAGCTTCAAAAACTTGCAGAGGATAAGCTTCAAAGTTCCGTCACTTTGGAAAATACACAAAGAAGGCTGTCCGATGTTAGAAGACAATTTCAACAGGTTAGGGATACAGTGGTGGAAATGCAATCTAAAATTGGTAGTAATCGAGTGACGTGCATGGAGTTACAAGTAGAACTTGAGAAAGAAAGGTTTGCCAAGAAAAGAGTGGAAGAGGATCTGGAGGTCGCTAGGAGAAAGTTTACGCGCCTTAAAGAGCAGAATGAGGGCTCTTCAGTAACTGAAAAGCTTCAAGAGGAACTTGAAGAGTACAGGGACATTATCAAGTGCAGTATCTGCCAAGACAGGGCAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTCTGCTACTCATGTATCCAGAAAGTTGCCGGGAGTAGGCATCGCAAGTGTCCACAATGTTCTACAAGCTTTGGGGCTAACGATGTTAAGTCCGTTTATTTATAA | 2640 | 0.3977 | MGSMNDSDRKRRHFSSLSPTPAAATAKKLPFLPVSEDKKLDIVVLQYQNQKLTQKLETQKLEYAGLENRFSLLKESQKSYDSTLAVVKKSWEQLVDDLELCSERTRESSRKINSRFASIMEDGSPSTVQDVFLSRLMQTDATECASTYNFANQMEEHREITTEKAKSILKNMVTAVNNLWVLMDGLHTAFLKKLPGGDLCRQKLSSDLEVIVKNLRLEFSELHSKHKSLASEFQIQRDLNAKNKADLERLKGELASTVKELEESNHKLATLKAERDAAKGVLPLLNVGSTHIPSDKIKDKQKDLQDMESTLKELLDQGSARLMELKSLHEERIRILQQLCDLQNTLKNLKCITSSHAFQLVRDQIEKSKAEVLEYQALYEKLQVEKDNLAWREREWYIKNDLADVFQRSVAVSDFRVADLRFEIQKKIEERYVIENKLKEEARGPGRKQIIAEFKSLVSSFPDEMGSMQIQLRKYKESASDIHSLRADVKSVSSILDRKVKECDVFSVRSAGQLAEIKRLLGVVQDLRESERDLKLILVMFRRESIDSRDVMDAREAEYRAWARVQSLKSSLDEHNLEHRVKTANEAEARSQQKLATAEAEIADMRQKLEDSKRQMCDLSDVLKSKNKQNENYMSEIESIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRARQKQDSLLMEKRVIEHEIQQANISLNVYDVKATRIEDQLKFCLDQLQKLAEDKLQSSVTLENTQRRLSDVRRQFQQVRDTVVEMQSKIGSNRVTCMELQVELEKERFAKKRVEEDLEVARRKFTRLKEQNEGSSVTEKLQEELEEYRDIIKCSICQDRAKEVVITKCYHLFCYSCIQKVAGSRHRKCPQCSTSFGANDVKSVYL* | 880 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso11g1759 | 879 | Coils | Coil | 49 | 69 | - | - | |
Gso11g1759 | 879 | Pfam | Zinc finger, C3HC4 type (RING finger) | 826 | 867 | - | - | |
Gso11g1759 | 879 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 808 | 879 | IPR013083 | - | |
Gso11g1759 | 879 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Gso11g1759 | 879 | Coils | Coil | 770 | 804 | - | - | |
Gso11g1759 | 879 | PANTHER | RING FINGER PROTEIN-RELATED | 1 | 879 | IPR013956 | GO:0004842|GO:0010390 | |
Gso11g1759 | 879 | SMART | ring_2 | 827 | 865 | IPR001841 | - | |
Gso11g1759 | 879 | ProSitePatterns | Zinc finger RING-type signature. | 842 | 851 | IPR017907 | - | |
Gso11g1759 | 879 | Coils | Coil | 707 | 727 | - | - | |
Gso11g1759 | 879 | Coils | Coil | 735 | 755 | - | - | |
Gso11g1759 | 879 | Coils | Coil | 365 | 385 | - | - | |
Gso11g1759 | 879 | Coils | Coil | 297 | 317 | - | - | |
Gso11g1759 | 879 | CDD | RING-HC_BRE1_like | 825 | 866 | - | - | |
Gso11g1759 | 879 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Gso11g1759 | 879 | ProSiteProfiles | Zinc finger RING-type profile. | 827 | 866 | IPR001841 | - | |
Gso11g1759 | 879 | SUPERFAMILY | RING/U-box | 819 | 877 | - | - | |
Gso11g1759 | 879 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 | 1 | 879 | - | - | |
Gso11g1759 | 879 | Coils | Coil | 581 | 615 | - | - | |
Gso11g1759 | 879 | Coils | Coil | 244 | 281 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso11g1759 | Gso-Chr11 | 25326926 | 25362219 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso11g1759 | 819 | 878 | C3H Transcription Factor Family | AT2G42030 | 35.211 | 4.99e-07 | 51.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso11g1759 | K10696 | - | gmx:100790744 | 1670.21 |