Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1746 ATGTGCAGTGGTTCCAAGAGAAAACCTTCCCAAACAGGTTTAATAATGGGGGATGAGCATGGAAGACAAGAAGGGTTGCATCATAAAATTTCAGCTTTGCTTGAGTTTTCGGCCGCAGATGATGTGACGTCTTTCAAAGATGCTGTTGAAAAAGAGGGTCATGATGTTGATGAGGTGGGGTTGTGGTATGGAAGGAGGGTTGGCTCAAAGGAATTGTGTTTTGAAGAGAGGACCCCTCTTATGATTGCTGCCATGTTTGGAAGCAAAAGTGTTTTGTCTTATATTCTTGGGACGGGTCGTGTTGATGTTAACCGGGCTTGTGGGTCAGATGGGGCTACTGCCCTTCATTGTGCTGTTGCTGGGGGTTCTTCCGCTTCCCTTGAAGTCATCAAGCTTTTGCTCGACGCATCGGCGGATGTTAGTACTGTTGACGCCAATGGAAACAGGTCGTGCGACTTGATTTTTTCGGTGTCTAATGGTGTATTCAATTCAAGAAAGAGGATACTACAAGCCGTACTAGAAGGTGCAGATGGTATTGATGAGGCTTGCCTCAGATTTGAGGAAGCAGTTGGCCAAATGGAGAAACAGCAACAGCAAGATGTAGATGCACTTCAGGTTTCAAAAGATGGGACTGAGAAGAAAGATTATCCTGTTGATCTCTCTCTTCCAGATATAAAAAATGGGATATATAGCTCAGATGAGTTTAGGATGTATACATTCAAAGTTAGGCCTTGCTCAAGAGCTTATTCTCATGATTGGACCGAGTGCCCCTTTGTTCATCCCGGGGAAAATGCAAGGCGCCGTGATCCAAGGAGATATCAATATAGCTGTGTCCCTTGCCCCGAGTTTCGGAAGGGATTCTGCAGCAAGGGGGATGCCTGCGATTATGCGCACGGTATTTTTGAGTGCTGGCTTCACCCTGCGCAATATAAAACAAGGCTTTGCAAGGAGACAGGATGCACCAGAAGAGTTTGTTTCTTTGCTCACAACGTGGAGGATCTCCGCCCTGTGTATGCTTCAACTGGTTCTGCTATGCCTTCTCCCAGATCATATTCTGTTAGTTCTCCTCCATTGGACCCTTTCACACTGGGCTCTCCATCTGCCTTGATACCACCTGCCTCATCCCCACCTTTGACTCCGTCTGGAGGATCTTCTCCTGCGGGTGGAACCATGTGGCACTCTCAGATTCATGTTGCTGTCCCTACCCTTCAGCTGCCCCAAAGCAGATTGAAATCTGCGCTAAATGCTAGAGATGTTGAATTGGACATGGAATTGCTTGGAATTGAAAATCATGGATGCTTGATGCAGCAGCTAATGATGGAGGGGACGGCTGGTCTTTCATCACCTTCTAACTGGAATAACTCCATGCCTAATAGTCCATCTCTTTGTGATTATACTGGGGACTTCAATAGGCTTTCAGGAGTGCAACCTACTAACCTTGAAGACGTTTTCGGGTCTCAGATACAATCTCCAGCCAGAATTCAAGTGCATCAAAATGTGAACCAGCAACTGAGAGGCTATCCCTCCAACCTTTACAATTCAAGCGTGATAGGATCGCCCTCATTCAGGGTTGATCCATCTGGGGCAGCAGCCGCAATGGCTTTGAATCCAAGAAATGCTGCCTTTGCTAATCGGAGCCAGAGCTTTATGGTTAACGGTGATACTGAGTTTCCTTCTCCTGCTACCTCTACTGCTGCCAAGCCTTCTACCTTCTCTGGTTGGGGTCCCTCTGATGGCAAGTTAGATTGGTCCATCCGTGGTGATGAACTAAAGAAGCCGAGCAAATCTTCTTCTGTAGGATTTTTGAAGCAGCAGTAG 1818 0.4681 MCSGSKRKPSQTGLIMGDEHGRQEGLHHKISALLEFSAADDVTSFKDAVEKEGHDVDEVGLWYGRRVGSKELCFEERTPLMIAAMFGSKSVLSYILGTGRVDVNRACGSDGATALHCAVAGGSSASLEVIKLLLDASADVSTVDANGNRSCDLIFSVSNGVFNSRKRILQAVLEGADGIDEACLRFEEAVGQMEKQQQQDVDALQVSKDGTEKKDYPVDLSLPDIKNGIYSSDEFRMYTFKVRPCSRAYSHDWTECPFVHPGENARRRDPRRYQYSCVPCPEFRKGFCSKGDACDYAHGIFECWLHPAQYKTRLCKETGCTRRVCFFAHNVEDLRPVYASTGSAMPSPRSYSVSSPPLDPFTLGSPSALIPPASSPPLTPSGGSSPAGGTMWHSQIHVAVPTLQLPQSRLKSALNARDVELDMELLGIENHGCLMQQLMMEGTAGLSSPSNWNNSMPNSPSLCDYTGDFNRLSGVQPTNLEDVFGSQIQSPARIQVHQNVNQQLRGYPSNLYNSSVIGSPSFRVDPSGAAAAMALNPRNAAFANRSQSFMVNGDTEFPSPATSTAAKPSTFSGWGPSDGKLDWSIRGDELKKPSKSSSVGFLKQQ* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1746 605 Pfam Ankyrin repeats (3 copies) 68 142 IPR002110 GO:0005515
Gso11g1746 605 MobiDBLite consensus disorder prediction 364 391 - -
Gso11g1746 605 Gene3D - 26 169 IPR036770 -
Gso11g1746 605 Gene3D - 274 336 - -
Gso11g1746 605 SMART ANK_2a 75 105 IPR002110 GO:0005515
Gso11g1746 605 SMART ANK_2a 110 142 IPR002110 GO:0005515
Gso11g1746 605 PANTHER UNKEMPT FAMILY MEMBER 19 604 IPR045234 -
Gso11g1746 605 SUPERFAMILY Ankyrin repeat 72 149 IPR036770 -
Gso11g1746 605 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Gso11g1746 605 SMART c3hfinal6 309 331 IPR000571 GO:0046872
Gso11g1746 605 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Gso11g1746 605 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Gso11g1746 605 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 19 604 - -
Gso11g1746 605 MobiDBLite consensus disorder prediction 553 571 - -
Gso11g1746 605 ProSiteProfiles Zinc finger C3H1-type profile. 274 301 IPR000571 GO:0046872
Gso11g1746 605 MobiDBLite consensus disorder prediction 553 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1746 Gso-Chr11 24681465 24684426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1746 28 600 C2H2 Transcription Factor Family AT5G12850 39.810 1.80e-131 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso11g1746 Ank_2 4.8e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1746 - - gmx:100806121 1173.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1746 11 24681465 24684426 Gso11g1746 11 24681465 24684426 ECH