Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1733 ATGCCAACCCAACCAGACTCACCACCCAACAACAACACGTTGACCCAAATGTTTCAGAACATCTTCTCAGACAACAGTAACATCATGCTTGCAGCCATCATTTCCCTCCTCTTAGTAATCCTCTTTGTCCTTCTTCTCCACCTCTACGCCAAGTGGTTCCTCGCTCAAGCACAGGCTCAGGCAAACGCCCGCCGCCGGAGGCGGCGCCGTCGCACGATGGTGACCGTCTCCGACGTCCTAGGCCCGGCAAGGTTCCACCACTTCCACAGCTTCACCATAGAAGACAGTTCACCCCTCTCAACAAAAGGGTTAGATTCTTCAACCATTAGAACAATTCCACTGTTCATCTATGAACACAACAACAACAACAACAACAAAAAGGTCCAGGAAGAAGAAGAAGAAGAAGAAGAACTTGAATGTGTGATTTGTTTGAGTGCATTTAAGAATGGTGAAGTGGGAAGGTGTTTACCAAAGTGTGGCCATGGCTTCCATGTGGAGTGCATTGACATGTGGTTGAGTTCACACTCCAATTGTCCTATTTGTAGAACCTCAATTGTAGCAAGTATTGTGGAAAATAATTCTAGTGATGATCATCATGGTGGAGATCATCATGATTTGGTTGAGATTGTGACTGAAGGTGGTTCTGCTGCTCCAAGTTCTGAGACTAGAGAGGGTGAACATGGGAATAGAGGAGCAAGAACAACTGTTTCTGTTATGTCAGTAAATTCTTCTTCTGAGTTCTTTGGATGCTCTTTGGAGAGAATGCTTGGCAAGGTTTTCCCAATATCAAGTAATGTAAATTAA 804 0.449 MPTQPDSPPNNNTLTQMFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYAKWFLAQAQAQANARRRRRRRRTMVTVSDVLGPARFHHFHSFTIEDSSPLSTKGLDSSTIRTIPLFIYEHNNNNNNKKVQEEEEEEEELECVICLSAFKNGEVGRCLPKCGHGFHVECIDMWLSSHSNCPICRTSIVASIVENNSSDDHHGGDHHDLVEIVTEGGSAAPSSETREGEHGNRGARTTVSVMSVNSSSEFFGCSLERMLGKVFPISSNVN* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1733 267 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Gso11g1733 267 Coils Coil 119 141 - -
Gso11g1733 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 189 IPR013083 -
Gso11g1733 267 SUPERFAMILY RING/U-box 120 188 - -
Gso11g1733 267 Pfam Ring finger domain 139 182 IPR001841 -
Gso11g1733 267 CDD RING-H2_EL5_like 140 182 - -
Gso11g1733 267 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 266 IPR044675 -
Gso11g1733 267 PANTHER - 1 266 - -
Gso11g1733 267 SMART ring_2 140 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1733 Gso-Chr11 24328736 24329741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1733 9 190 Rapid Response to Elicitors AT3G16720 36.022 2.41e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1733 - - gmx:100816238 332.413