Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1725 ATGGACATGGTCGATAATAATCAAAATAAGCAAAGACCAGGGTTTTCAAGAAAGCTTGGTGTCAATGAAAAAGTGGAGGTGAGGAGTGTGGATTTGGGGTTTCTAGGATCATGGCACCCTGCGACAGTTATACAGTGTGAGAAGCTGAAGCGGCATGTCAGATATAACAATGTTTTGGATGATAGTGGGGTGAATTATCTTGAGGAGGCAGTGAGTGTTTCAGAAGCTTTGGATGGTGATAATGAATGTTACAGCTACTCGCGTGGATCCATTAGGCCAATGCCTCCTTTGGTTGAGTTTGAGAGAGGGGACCTTAAGTTCGGTCTGTGTGTTGATGTGAACTATGAGGAAGCTTGGTGGGAAGGTGTTATATTCGACGACCACTGTGACGGAATGGAGAAGAGGAGTGTGTTTTTTCCCGATTTGGGTGATGAAATGCAAGTTGGAATTCATCAGTTGCGGATTACTCAGGACTGGCATGAAGTTACTGGGGAGTGGGAGCAGCGGGGGAACTGGGTGTTTCTTGATTTGGTTGAGGAGCAGAAGAGGAAATCGTTTGTTGCAGTTTCGGCTAAGCAGATTTGGTATGATGTACGCATAAAAAATGGATTTGAGAAGATTCGAGAGTGGACATGTAATATGAAGTACTTGTGGAGAAATCTGGTAATGGAGGTAATTAATGACTACTTATCTCTTACGGTAAATGAAGTTATCTTAGTGTTGAATCTTCCATGGAGTTTATTAAATGAAGCACCGGAGCCCGAATCTGTTGAAGCTATGGCTAGTGTTGACTTAAGCGTGACCTTTCCTGATAAGGAAATTGTTGTGCAGAAAGAACCAGTTCCTCCTGTTAAAGAGGTCTTACCCAAGTTGCAAAAAGAAATTGGCCCCTGTGGTGCTTTCTGGTCTGAAGAAAGTAGAGAAAATAAATCCTCAACTCATTTAAGGTCACACTATTGGAAACCTCTGAAGTTGTCTGAAGTTGCATTATGCCCTGATGCTGTTAGGGAATATCTACTTGCTCCCAACCGAGCAGATAAGGCATTGTGGATGGAAAAATTACAAAAACATCTTGTATGTCTTGGATGGAAAATTGAGTGGTCAAATAAAAATAATATTAAGCGTTACAGGTATAATGTTCCTGATAAGCAGGGCAAAAAGTTTTACCTTTCGCTCATTGAAGTTTGTAGAGATATGGAAAAGGACCCCGGCACAAACTCCTTGCAGCTCCAAAATGATCAGAGTATAGTTGATCCTACAGTAGACTGTCATCTTCCAGATGTGCCTCTTAATCCATCAGAAAATATTCAGAATCCAGATATCTTTCCTCCAACTATTTCATCTTCTCTGGTTGAAGATGAAGTTGAAGATGTACCTAAGTTTTGTCCTGAGGCTGTTGAGCAGTATTATCGCTCGTATATATCCAACATGAGTCGGGCTGATAAAAAACAATGGATACTGAAAGCAAAGAACCATTTGTTAGCCGAAGGATGGATTTTTGACTATCCACCTCCAACTAATAAGAAAAGGGGAATAATATACATTTCTCCACTAAATCGAAGATTCCCAACACTCCATGCAGCATGCAGATTTTGTATGGGAAAAAGTATTTCTAAATTGGCTAGGTCTGACATGAAACATTTAAATGTCTCAGGCATGAATGAAGAAAATGTTGATCAGGTTTGGAGCGGGGATCTAGTTTGTAGATCAGCTGGAAATCTAGTTTGTAGATCAGCTGGAAATCGAAAGCGAAAGAGCTTGGGGAATTCAAAGGCCAACATACCCAAGTGCCAAAGCAATGGATTGACTCTACGGGTGCTAAGATCAAAAAAGAGGGCACAAAAGGTGTCTGCCCCTTCTCTTATAAATCATAAACCTCTGAATGTTCTGTCTTACTTGATAGACAACAGCATCATCTTACCAAGGTGTAAGGTTTATTATAAGGTGAAAGGCAGGCACCGTAAAGTCTGTACTTTGGCTGATGGGAAAATAACTCGTGATGGAATCAAGTGTAACTGTTGCATGGGAATATACAGTTTTGTTGGCTTTGAAAATCATGCTAGTGGTAGTAGTACTTGCAGACCCTCTGCTAGGATCTTTTTGGAAGATGGTAGATCACTATTAGATTGCCAGATAAAAATGATGCATGATCATAAGACAAGGGAAACTACTGGAAAATCATTCAGTGGTTTGTCTCTAGTTGAGAATGACTACATTTGTTCTGTTTGTCACTATGGTGGTGAACTTATTTTATGTGATAAATGCCCGTCTTCATTTCATAAGACATGTCTTGGTTTGGAGGACATCCCTAATGGTGACTGGTTTTGTCCATCATGTTGTTGTGGGATTTGTGGCCAAAGGAAAATTGACGGAGATGATGAGGTTGGACAATTACTTCCTTGCATTCAGTGTGAACATAAATATCATGTTAGGTGCCTGGAAAATGGAGCTGCAGATATATCAACAAGATATCTTGGAAATTGGTTCTGTGGAAAAGACTGTGAAAAGATATATGAGGGCCTTCATAAATTATTAGGAGAGCCAGTTTCGGTGGGTGTGGACAATCTAACTTGGACATTGGTGAAGTTTATCAACCCCGACAGTTGTGAACATGATAGTAGTAAAAGTGACTTATTGGCAGAAAGTTACAGCAAGCTCAATCTTGCTATTTCGGTGATGCATGAATGTTTTGAGCCCCTTAAGGAATCCTTAACAAACAGAGATCTTGTGGAAGATGTTATATTCAGCAGATGGTCAGAGCTAAACAGATTGAATTTCCAGGGTTTCTATACTGTGCTACTTGAGAGAAATGAAGAACTAATTAGTGTGGCAACTGTTAGGGTCTATGGGAAGAAGGTTGCTGAAATACCTCTTGTTGGTACCAGATTACAATATCGTCGACGTGGAATGTGTCACATTTTAATAGAAGAGCTTGAAAAGAAGCTCAAGCAATTAGGGGTGGAGAGGCTTGTTTTACCTGCTGTTCCTAGTGTGCTAGAAACATGGACCCGCTCTTTTGGTTTTGCAAAGATGACTAATCTTGAGAGATCTCAATTTCTGGACTATACTTTCCTAGATTTTCAGGGTGCCATCATGTGTCAAAAGCTCTTGACGAATAATAATCCATCTCCGAATCCAGTCTTGTTAACAGAGTCACAAGCAAAATGTGATGTTTCTTCTGGAAGTTGCTGTGCTAACCTCAGTGAGTCTAGTCCAGTATGTGAATTATACCAAGTAGAAGAGATTGATCTAGGAGGGATGATGAATCATCAAATGGAGTATACTTGTGCTGGCAAAAATAATCAAGTTATTGGTGCTATTGACCTAGTCACCATTGTGGAGCAACCGAGTCCTGGGGATCAACAGTGCCAGAATGGAACAACCAGCTTAGAGTGCTCTATTGATAATAATGGCCTGTATAAGTGCGTCTACACGCGAAGGAAAGTGAGAAAGTCATGTGAAGGATTTAGCATGCCATCATGA 3483 0.4054 MDMVDNNQNKQRPGFSRKLGVNEKVEVRSVDLGFLGSWHPATVIQCEKLKRHVRYNNVLDDSGVNYLEEAVSVSEALDGDNECYSYSRGSIRPMPPLVEFERGDLKFGLCVDVNYEEAWWEGVIFDDHCDGMEKRSVFFPDLGDEMQVGIHQLRITQDWHEVTGEWEQRGNWVFLDLVEEQKRKSFVAVSAKQIWYDVRIKNGFEKIREWTCNMKYLWRNLVMEVINDYLSLTVNEVILVLNLPWSLLNEAPEPESVEAMASVDLSVTFPDKEIVVQKEPVPPVKEVLPKLQKEIGPCGAFWSEESRENKSSTHLRSHYWKPLKLSEVALCPDAVREYLLAPNRADKALWMEKLQKHLVCLGWKIEWSNKNNIKRYRYNVPDKQGKKFYLSLIEVCRDMEKDPGTNSLQLQNDQSIVDPTVDCHLPDVPLNPSENIQNPDIFPPTISSSLVEDEVEDVPKFCPEAVEQYYRSYISNMSRADKKQWILKAKNHLLAEGWIFDYPPPTNKKRGIIYISPLNRRFPTLHAACRFCMGKSISKLARSDMKHLNVSGMNEENVDQVWSGDLVCRSAGNLVCRSAGNRKRKSLGNSKANIPKCQSNGLTLRVLRSKKRAQKVSAPSLINHKPLNVLSYLIDNSIILPRCKVYYKVKGRHRKVCTLADGKITRDGIKCNCCMGIYSFVGFENHASGSSTCRPSARIFLEDGRSLLDCQIKMMHDHKTRETTGKSFSGLSLVENDYICSVCHYGGELILCDKCPSSFHKTCLGLEDIPNGDWFCPSCCCGICGQRKIDGDDEVGQLLPCIQCEHKYHVRCLENGAADISTRYLGNWFCGKDCEKIYEGLHKLLGEPVSVGVDNLTWTLVKFINPDSCEHDSSKSDLLAESYSKLNLAISVMHECFEPLKESLTNRDLVEDVIFSRWSELNRLNFQGFYTVLLERNEELISVATVRVYGKKVAEIPLVGTRLQYRRRGMCHILIEELEKKLKQLGVERLVLPAVPSVLETWTRSFGFAKMTNLERSQFLDYTFLDFQGAIMCQKLLTNNNPSPNPVLLTESQAKCDVSSGSCCANLSESSPVCELYQVEEIDLGGMMNHQMEYTCAGKNNQVIGAIDLVTIVEQPSPGDQQCQNGTTSLECSIDNNGLYKCVYTRRKVRKSCEGFSMPS* 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1725 1160 Pfam Acetyltransferase (GNAT) family 922 1008 IPR000182 GO:0016407
Gso11g1725 1160 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 876 1038 IPR000182 GO:0016407
Gso11g1725 1160 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 5 1091 - -
Gso11g1725 1160 Pfam Tify domain binding domain 662 713 IPR032308 -
Gso11g1725 1160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 781 837 IPR013083 -
Gso11g1725 1160 SMART agenet_At_2 103 161 IPR014002 -
Gso11g1725 1160 SMART agenet_At_2 17 99 IPR014002 -
Gso11g1725 1160 PANTHER PHD ZINC FINGER PROTEIN 5 1091 - -
Gso11g1725 1160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 732 780 IPR013083 -
Gso11g1725 1160 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 917 1016 IPR016181 -
Gso11g1725 1160 SUPERFAMILY FYVE/PHD zinc finger 721 779 IPR011011 -
Gso11g1725 1160 Pfam PHD-finger 739 781 IPR019787 -
Gso11g1725 1160 SMART PHD_3 781 834 IPR001965 -
Gso11g1725 1160 SMART PHD_3 739 780 IPR001965 -
Gso11g1725 1160 Gene3D - 894 1023 - -
Gso11g1725 1160 Pfam Agenet domain 23 96 IPR008395 -
Gso11g1725 1160 CDD NAT_SF 932 992 - -
Gso11g1725 1160 ProSiteProfiles Zinc finger PHD-type profile. 737 782 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1725 Gso-Chr11 24090568 24099988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1725 596 980 PHD Transcription Factor Family AT5G58610 52.430 2.43e-124 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso11g1725 Acetyltransf_1 4.6e-05 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1725 - - gmx:100814680 2371.66