Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1717 ATGGGTTCTTCTTGGATAAGAGGGAAGTGCGTTGGTAAGGGCGCGTTTGGCACTGTCAGTGTCGCGCTTCGCAAACGTGACGATCAAACTCAAATTTTCGCGGTGAAGTCCGTGGATTTAAAAACGGGTCTCCCGGGTCAGCTGGAGGCGTTGGAGAACGAGATTCGGATCCTCCAGCGCATGTCTTCTCCGCACGTGGTAACTTTTCTCGGCGACGACGCCACGTGCGAGCAGCGGAACCTTCATATGGAGTACATGCCAGGTGGCACGCTCGCTGACCTGGATGCTGACGTGGACGAGATTTTAGTGAGACACTACACGTGGTGCCTTGTGAGCGCTCTGAAGCACTTGCACGCAAACGGCGTCGTTCACTGCGACGTGAAGGGAAAGAACGTTCTCGTCGGAGACGGAGGGAAAGGTTTCAATTGCAAGCTCGCTGACTTCGGATCGGCGGCGGAGTTCTCCGGCGAAGGGTTTCCGGCGGTGGTGCCGCGCGGGAGTCCGCTGTGGATGGCGCCGGAGGTGGTTCGCCGGGAGTTGCAAGGTCCGGCGTCGGATGTTTGGTCGTTGGGATGCACGGTGATCGAGATGATCACCGGAAAACCGCCGTTGGAGGGGAACATTGTGGACACGCTGAACCGGATCGGGTTCTCCGGCGAGGTGCCGGAGTTTCCGAGGCGGTTGTCGGAGCTCGGAAGGGATTTTCTCGAGAAGTGTTTGAGAAGGGAAGCGTGGCGGCGGTGGAGCTGCGATCAGCTGCTGCAGCATCCGTTTTTGTTGCCGTGTGGTGAGATTGCGGAATCGTCGCCGCGGTGTGTTCTCGACCGAGTTGACTCGGAGTTCGCCGAGTTCGACCACGACGAAGAAGAAGAAGAAGAAGAAACGATAACTGAAAATGAAAACCGGGCGAGGGGTAGAATTGGAAAATTGGCGATCAGGGAAATGGTAAATTGGGAAACAGAAGGTTGGGTGGTGGTGAGGGAATTGGCTTCCGACGCGGAACCGGCGGTGGCAGTTGACAGTTCTGAAGAAGTTAAAGACTTGACATGCCCGCGAAATATTCGGAAAGAGAGGGTAGAAAGGGGAATTCATTTAGGGACAAATTCGGAATTTAAAAATATAGAAAACGAAAGGGTAAAAATGAAAATGTGGGATTTGGGTGGGAGGGGGTGGTTGGTGCAGTGCAACTGCAATCACAGGGAGAGTGAAGCTAGTTGGAGGTGTCAGTGTGTGTGGAAAAATGTTGATAAGAAAAAAGGAATAATAATGAAAATGAATATTTACAGGTTGTACTGTAAATTATTGAAATCACGTTGTTTGTTCTTGGAGTATCTAAATACATATTTATGTTTTTGGGCTATTTATGTTGATTACTTTTTATGA 1383 0.5148 MGSSWIRGKCVGKGAFGTVSVALRKRDDQTQIFAVKSVDLKTGLPGQLEALENEIRILQRMSSPHVVTFLGDDATCEQRNLHMEYMPGGTLADLDADVDEILVRHYTWCLVSALKHLHANGVVHCDVKGKNVLVGDGGKGFNCKLADFGSAAEFSGEGFPAVVPRGSPLWMAPEVVRRELQGPASDVWSLGCTVIEMITGKPPLEGNIVDTLNRIGFSGEVPEFPRRLSELGRDFLEKCLRREAWRRWSCDQLLQHPFLLPCGEIAESSPRCVLDRVDSEFAEFDHDEEEEEEETITENENRARGRIGKLAIREMVNWETEGWVVVRELASDAEPAVAVDSSEEVKDLTCPRNIRKERVERGIHLGTNSEFKNIENERVKMKMWDLGGRGWLVQCNCNHRESEASWRCQCVWKNVDKKKGIIMKMNIYRLYCKLLKSRCLFLEYLNTYLCFWAIYVDYFL* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1717 460 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 3 357 - -
Gso11g1717 460 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 357 - -
Gso11g1717 460 CDD STKc_MAPKKK 4 259 - -
Gso11g1717 460 Gene3D Transferase(Phosphotransferase) domain 1 3 321 - -
Gso11g1717 460 ProSitePatterns Protein kinases ATP-binding region signature. 11 36 IPR017441 GO:0005524
Gso11g1717 460 SMART serkin_6 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1717 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Gso11g1717 460 Pfam Protein kinase domain 8 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1717 460 ProSiteProfiles Protein kinase domain profile. 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g1717 460 SUPERFAMILY Protein kinase-like (PK-like) 4 273 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1717 Gso-Chr11 23743334 23744886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1717 5 334 MAP Kinase Kinase Kinase AT2G30040 58.824 1.47e-118 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso11g1717 Pkinase 2.5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1717 - - gsj:114373085 924.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1717 11 23743334 23744886 Gso11g1717 11 23743334 23744886 ECH