Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1657 ATGACCACTTCTTTCTCTGACCTTCTTTCTTCTCCCACCTCCAATCACCACAATCTCGGAGGCTTCGAAAGACCTCATCATGAGTCCTACTCGTCGGATCAAACAGGTTCTTCAGGCGGTGTGCCAAAATTCAAGTCCACACCCCCTCCTTCTCTCCCTCTTAGCCATAATCATCCTCAAACACCAATATTTTCTCCTTCTTCTTACTTTAACATCCCTCATGGGTTAAGCCTCGCTGAACTTCTTGACTCCCCCGTTCTCCTTAACTCTTCCAACGTTCTGCCATCTCCAACAGCTGGATCATTTGGTGGTCAAGGCTTCAATTGGAAGAGCAGTTATGGGGAAAGCCAGCAGCATATCAAAGAAGAAGACAAAAGCTTCTCTAGTTTCTCCTTCCCAACACAAACACACCCTCCTCTTCCATCTTCAACTGGATTTCAATCTTCAACCGGCATAGTTCAAACCGGATGGAGTTTTCCAGAAACTGCTAAACAGGATGGTTTTGCTTCAAGAATAAGTATGAGCATGGTGAAAACTGAAACCACTTCTGCCATGCAGAGTTTGACCCCTGAGAATAATAACCACAGGAATGGTTTTCAATCAGATCATAAAAACTACCAACCACAACAAGTTCAGACCTTGAGCAGAAGATCAGATGATGGGTACAATTGGAGGAAATATGGGCAAAAGCAAGTGAAAGGAAGTGAAAATCCAAGAAGCTACTACAAGTGCACATACCCCAATTGTCCAACAAAGAAAAAAGTTGAGAAATCCTTAGATGGACAAATTACCGAGATAGTTTACAAAGGCACTCATAACCATCCCAAGCCTCAAGCTGCCAAGAGGAACTCATTGTCTGCCTCATCATCACTTGCAATTCCTCATTCAAATCATGGCAGCAATGAACTACCACATCATCAAATGGATTCGGTTGCCACTCCTGAAAATTCATCAATTTCAATGGATGATGATGATTTTGATCATACTAAATCAGGAGGAGATGAGTTTGATAATGATGAACCTGATGCCAAAAGATGGAGAATAGAAGGTGAAAATGAGGGTATATCAGCTGTAGGAAGTAGAACAGTGAGAGAACCCAGAGTTGTGGTTCAGACAACCAGTGACATCGATATTCTAGATGATGGATACAGGTGGAGGAAATATGGACAGAAAGTGGTCAAGGGAAATCCAAATCCAAGGAGTTACTACAAGTGCACATTCCCAGGATGTCCAGTGAGGAAGCACGTAGAGAGAGCCTCACAAGACCTAAGGGCAGTGATCACAACCTATGAGGGAAAACACAACCATGACGTGCCTGCAGCACGTGGCAGTGGCAACAACTCTATCAGTAGATCATTGCCAATAATAACCAATACAACAAACAACACCACTAGTGTAGCAACTTCTATCAGCACTAATAACAATTCTCTTCAGAGTCTTAGACCACCAGCTCCACCAGAAAGGCCATCATTATCACACTTCAACCCTAATATGCAGCACAGTTCAGGAAGCTTTGGATTCTCAGGGTTTGGAAATCCATTAATGGGGTCTTACATGAATCAACAATCTTACAATAATGTTTTCACCACCACTAGAGACAAGGAGGAGCCTGGAGATGACTCGTTTCTTGACTCTTTGCTATGTTAA 1647 0.4293 MTTSFSDLLSSPTSNHHNLGGFERPHHESYSSDQTGSSGGVPKFKSTPPPSLPLSHNHPQTPIFSPSSYFNIPHGLSLAELLDSPVLLNSSNVLPSPTAGSFGGQGFNWKSSYGESQQHIKEEDKSFSSFSFPTQTHPPLPSSTGFQSSTGIVQTGWSFPETAKQDGFASRISMSMVKTETTSAMQSLTPENNNHRNGFQSDHKNYQPQQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVEKSLDGQITEIVYKGTHNHPKPQAAKRNSLSASSSLAIPHSNHGSNELPHHQMDSVATPENSSISMDDDDFDHTKSGGDEFDNDEPDAKRWRIEGENEGISAVGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFPGCPVRKHVERASQDLRAVITTYEGKHNHDVPAARGSGNNSISRSLPIITNTTNNTTSVATSISTNNNSLQSLRPPAPPERPSLSHFNPNMQHSSGSFGFSGFGNPLMGSYMNQQSYNNVFTTTRDKEEPGDDSFLDSLLC* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1657 548 MobiDBLite consensus disorder prediction 180 218 - -
Gso11g1657 548 MobiDBLite consensus disorder prediction 127 147 - -
Gso11g1657 548 MobiDBLite consensus disorder prediction 180 223 - -
Gso11g1657 548 MobiDBLite consensus disorder prediction 113 147 - -
Gso11g1657 548 Gene3D WRKY domain 366 432 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso11g1657 548 ProSiteProfiles WRKY domain profile. 219 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso11g1657 548 MobiDBLite consensus disorder prediction 269 341 - -
Gso11g1657 548 MobiDBLite consensus disorder prediction 321 341 - -
Gso11g1657 548 Pfam WRKY DNA -binding domain 219 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso11g1657 548 Pfam WRKY DNA -binding domain 380 436 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso11g1657 548 SMART WRKY_cls 379 438 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso11g1657 548 SMART WRKY_cls 218 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso11g1657 548 MobiDBLite consensus disorder prediction 1 60 - -
Gso11g1657 548 MobiDBLite consensus disorder prediction 1 18 - -
Gso11g1657 548 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 31 516 - -
Gso11g1657 548 MobiDBLite consensus disorder prediction 473 492 - -
Gso11g1657 548 SUPERFAMILY WRKY DNA-binding domain 217 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso11g1657 548 MobiDBLite consensus disorder prediction 277 319 - -
Gso11g1657 548 Gene3D WRKY domain 205 278 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso11g1657 548 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 31 516 IPR044810 GO:0003700
Gso11g1657 548 ProSiteProfiles WRKY domain profile. 374 439 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso11g1657 548 SUPERFAMILY WRKY DNA-binding domain 371 439 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1657 Gso-Chr11 20843121 20847041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1657 216 445 WRKY Transcription Factor Family AT2G38470 66.802 5.04e-105 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso11g1657 WRKY 1.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1657 K13424 - gmx:100127421 1090.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1657 11 20843121 20847041 Gso11g1657 11 20843121 20847041 ECH